View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8758_low_15 (Length: 397)

Name: NF8758_low_15
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8758_low_15
NF8758_low_15
[»] scaffold0223 (1 HSPs)
scaffold0223 (1-372)||(20193-20567)
[»] chr2 (21 HSPs)
chr2 (1-61)||(19536376-19536435)
chr2 (1-61)||(34691784-34691843)
chr2 (1-61)||(34714196-34714255)
chr2 (1-39)||(2438719-2438757)
chr2 (3-40)||(18421986-18422023)
chr2 (1-61)||(18255959-18256018)
chr2 (1-39)||(5040755-5040793)
chr2 (1-39)||(15657885-15657923)
chr2 (1-39)||(18622627-18622665)
chr2 (1-80)||(20539631-20539712)
chr2 (1-39)||(23058442-23058480)
chr2 (1-31)||(30404858-30404888)
chr2 (1-31)||(30717538-30717568)
chr2 (1-31)||(33153445-33153475)
chr2 (1-39)||(37558998-37559036)
chr2 (1-39)||(38117159-38117197)
chr2 (1-38)||(11223864-11223901)
chr2 (4-37)||(29176495-29176528)
chr2 (2-39)||(44635520-44635557)
chr2 (3-39)||(974770-974806)
chr2 (7-39)||(21624294-21624326)
[»] chr6 (23 HSPs)
chr6 (1-61)||(7801134-7801194)
chr6 (1-82)||(426475-426552)
chr6 (1-39)||(8776973-8777011)
chr6 (1-39)||(9911528-9911566)
chr6 (1-39)||(10770674-10770712)
chr6 (1-39)||(16766718-16766756)
chr6 (1-39)||(28152119-28152157)
chr6 (1-39)||(32511666-32511704)
chr6 (1-39)||(34595155-34595193)
chr6 (1-57)||(7027263-7027317)
chr6 (1-61)||(5732489-5732548)
chr6 (1-37)||(9522912-9522948)
chr6 (1-39)||(5970108-5970146)
chr6 (1-39)||(7977830-7977868)
chr6 (1-39)||(8714001-8714039)
chr6 (1-39)||(9107370-9107408)
chr6 (1-39)||(28715316-28715354)
chr6 (1-31)||(31384941-31384971)
chr6 (1-38)||(31429004-31429041)
chr6 (3-39)||(8365519-8365555)
chr6 (1-37)||(16833329-16833365)
chr6 (1-37)||(17435220-17435256)
chr6 (7-39)||(20576633-20576665)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-61)||(46703-46761)
[»] chr7 (18 HSPs)
chr7 (1-39)||(25481923-25481961)
chr7 (1-61)||(27945062-27945122)
chr7 (1-39)||(18039020-18039058)
chr7 (1-39)||(21560524-21560562)
chr7 (1-39)||(24339663-24339701)
chr7 (1-61)||(38143244-38143303)
chr7 (1-60)||(3721114-3721172)
chr7 (1-39)||(2334271-2334309)
chr7 (1-39)||(3991345-3991383)
chr7 (1-39)||(5409836-5409874)
chr7 (9-39)||(7058455-7058485)
chr7 (1-39)||(9408334-9408372)
chr7 (1-39)||(9778521-9778559)
chr7 (1-39)||(21880173-21880211)
chr7 (1-31)||(26033469-26033499)
chr7 (1-39)||(32094020-32094058)
chr7 (1-38)||(7438727-7438764)
chr7 (1-30)||(13557750-13557779)
[»] scaffold0793 (1 HSPs)
scaffold0793 (1-38)||(4884-4921)
[»] chr4 (20 HSPs)
chr4 (1-38)||(715608-715645)
chr4 (1-38)||(752934-752971)
chr4 (1-39)||(11596352-11596390)
chr4 (1-39)||(12797338-12797376)
chr4 (1-39)||(42640550-42640588)
chr4 (3-39)||(19482691-19482727)
chr4 (1-37)||(29205465-29205501)
chr4 (1-82)||(30298968-30299051)
chr4 (1-82)||(30327836-30327919)
chr4 (1-32)||(40481657-40481688)
chr4 (1-47)||(6485603-6485649)
chr4 (1-39)||(6879465-6879503)
chr4 (1-39)||(16073415-16073453)
chr4 (1-39)||(21945524-21945562)
chr4 (1-39)||(23292986-23293024)
chr4 (1-31)||(28964256-28964286)
chr4 (1-39)||(49431047-49431085)
chr4 (1-39)||(54580023-54580061)
chr4 (3-39)||(15029788-15029824)
chr4 (2-38)||(28000743-28000779)
[»] chr3 (23 HSPs)
chr3 (1-61)||(7928471-7928530)
chr3 (1-36)||(4987294-4987329)
chr3 (1-39)||(25948887-25948925)
chr3 (1-39)||(28918022-28918060)
chr3 (1-61)||(21256963-21257024)
chr3 (2-39)||(25775531-25775568)
chr3 (1-36)||(26508131-26508166)
chr3 (1-39)||(1509560-1509598)
chr3 (1-39)||(7171522-7171560)
chr3 (1-39)||(8587021-8587059)
chr3 (1-39)||(8593158-8593196)
chr3 (1-39)||(10954973-10955011)
chr3 (1-31)||(14209134-14209164)
chr3 (1-39)||(16789033-16789071)
chr3 (1-39)||(27505267-27505305)
chr3 (1-39)||(28812536-28812574)
chr3 (1-39)||(34185123-34185161)
chr3 (1-39)||(34910338-34910376)
chr3 (1-31)||(35994746-35994776)
chr3 (1-39)||(49651786-49651824)
chr3 (1-39)||(51206353-51206391)
chr3 (1-39)||(55401096-55401134)
chr3 (1-37)||(20503486-20503522)
[»] chr1 (28 HSPs)
chr1 (1-56)||(31672879-31672933)
chr1 (1-39)||(113320-113358)
chr1 (1-39)||(18337350-18337388)
chr1 (1-39)||(24577186-24577224)
chr1 (1-39)||(47989518-47989556)
chr1 (1-39)||(51410046-51410084)
chr1 (1-38)||(1815278-1815315)
chr1 (1-38)||(40258934-40258971)
chr1 (1-39)||(1486709-1486747)
chr1 (1-39)||(1704992-1705030)
chr1 (1-39)||(5944304-5944342)
chr1 (1-39)||(6332691-6332729)
chr1 (1-39)||(6612171-6612209)
chr1 (1-35)||(13011219-13011253)
chr1 (1-39)||(13436479-13436517)
chr1 (1-39)||(22515887-22515925)
chr1 (1-39)||(22881616-22881654)
chr1 (1-31)||(31015064-31015094)
chr1 (1-39)||(31694710-31694748)
chr1 (1-39)||(38078661-38078699)
chr1 (1-39)||(42359449-42359487)
chr1 (5-38)||(8117059-8117092)
chr1 (6-39)||(19058856-19058889)
chr1 (5-38)||(27471567-27471600)
chr1 (1-38)||(28273089-28273126)
chr1 (1-37)||(21378599-21378635)
chr1 (7-39)||(24334705-24334737)
chr1 (1-37)||(32461465-32461501)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-39)||(23791-23829)
[»] chr8 (18 HSPs)
chr8 (1-39)||(4948673-4948711)
chr8 (1-39)||(22596015-22596053)
chr8 (1-39)||(25566862-25566900)
chr8 (1-37)||(7442866-7442902)
chr8 (1-37)||(40332212-40332248)
chr8 (1-40)||(24669454-24669493)
chr8 (1-61)||(31514894-31514958)
chr8 (1-39)||(2572056-2572094)
chr8 (1-39)||(8342993-8343031)
chr8 (1-39)||(17468508-17468546)
chr8 (1-31)||(18407740-18407770)
chr8 (1-39)||(20873090-20873128)
chr8 (1-39)||(24613541-24613579)
chr8 (1-39)||(36450754-36450792)
chr8 (1-38)||(31557017-31557054)
chr8 (2-38)||(9414876-9414912)
chr8 (1-37)||(11803280-11803316)
chr8 (3-31)||(30077395-30077423)
[»] chr5 (14 HSPs)
chr5 (1-39)||(6247643-6247681)
chr5 (1-39)||(15884009-15884047)
chr5 (1-39)||(21191056-21191094)
chr5 (1-62)||(8420048-8420108)
chr5 (1-36)||(43001821-43001856)
chr5 (1-31)||(7218275-7218305)
chr5 (1-39)||(13287399-13287437)
chr5 (4-38)||(21351906-21351940)
chr5 (1-31)||(21576753-21576783)
chr5 (1-39)||(33178046-33178084)
chr5 (1-31)||(39698562-39698592)
chr5 (6-39)||(21542056-21542089)
chr5 (1-38)||(42893381-42893418)
chr5 (3-31)||(4105282-4105310)
[»] scaffold0103 (1 HSPs)
scaffold0103 (1-33)||(51832-51864)
[»] scaffold0004 (1 HSPs)
scaffold0004 (2-38)||(123650-123686)
[»] scaffold0246 (1 HSPs)
scaffold0246 (1-32)||(19596-19627)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-36)||(130503-130538)
[»] scaffold0652 (1 HSPs)
scaffold0652 (1-39)||(462-500)
[»] scaffold0171 (1 HSPs)
scaffold0171 (1-39)||(23441-23479)
[»] scaffold0136 (1 HSPs)
scaffold0136 (1-31)||(3857-3887)
[»] scaffold0361 (1 HSPs)
scaffold0361 (1-30)||(14551-14580)
[»] scaffold0083 (1 HSPs)
scaffold0083 (6-39)||(45530-45563)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-38)||(17750-17787)


Alignment Details
Target: scaffold0223 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 20193 - 20567
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcgag--------acacgcctaatccgaggagtacagttcgtgcttcataggatcgcacacaat 92  Q
    |||||||||||||||||||||||||||||||  |||||| |        ||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  20193 aaatcacataattcagtgtaattacaagtgtcagtgtcgtgtcggtgggacacgcctaatccgaggagtacagtccgtgcttcataggatcacacacaat 20292  T
Q  93 ataagtactacacccggacgattttaaaccatgcccccactatactacttttaagtcctttgaaaagtttgaaattatttctaaagaagaaaataaagct 192  Q
    |||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20293 ataag-------cccggactattttaaaccatgcccccactatactacttttaagtcctttgaaaagtttgaaattatttctaaagaagaaaataaagct 20385  T
Q  193 atggtgacctttttggggagaaatttctgtagctaaagagagaatcagattccattccaagagattcatgatcaccaaatccatcatcatcatgctcctg 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20386 atggtgacctttttggggagaaatttctgtagctaaagagagaatcagattccattccaagagattcatgatcaccaaatccatcatcatcatgctcctg 20485  T
Q  293 aaaagattgttttttatgtacggaactagtcctatctgtcacatataaaccaacac--attaaggaaattagattggtaagt 372  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  20486 aaaagattgttttttatgtacggaagtagtcctatctgtcaaatataaaccaacacatattaaggaaattagattggtaagt 20567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 19536435 - 19536376
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcgagacacgcctaatccgaggagt 61  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  19536435 aaatcacataattcagtgtaattacaagtgtcggtgtcg-gacacgcctaatccgaggagt 19536376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 34691843 - 34691784
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcgagacacgcctaatccgaggagt 61  Q
    |||||| ||||||||||||||||| | |||| ||||||| |||||||||||||||||||||    
T  34691843 aaatcatataattcagtgtaattatatgtgtcggtgtcg-gacacgcctaatccgaggagt 34691784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 34714255 - 34714196
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcgagacacgcctaatccgaggagt 61  Q
    |||||| ||||||||||||||||| | |||| ||||||| |||||||||||||||||||||    
T  34714255 aaatcatataattcagtgtaattatatgtgtcggtgtcg-gacacgcctaatccgaggagt 34714196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2438757 - 2438719
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  2438757 aaatcacataattcagtgtaattacaagtgtcggtgtcg 2438719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 18421986 - 18422023
Alignment:
Q  3 atcacataattcagtgtaattacaagtgttggtgtcga 40  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  18421986 atcacataattcagtgtaattacaagtgtcggtgtcga 18422023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 18256018 - 18255959
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcgagacacgcctaatccgaggagt 61  Q
    ||||||||||||| | |||||||| |||||| ||||||| |||||||||||||| ||||||    
T  18256018 aaatcacataatttaatgtaattagaagtgtcggtgtcg-gacacgcctaatccaaggagt 18255959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 5040755 - 5040793
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  5040755 aaatcacataattcaatgtaattacaagtgtcggtgtcg 5040793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 15657885 - 15657923
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  15657885 aaatcacataattcagtgtaattacaaatgtcggtgtcg 15657923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 18622627 - 18622665
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  18622627 aaatcacataattcagtgtaattatacgtgttggtgtcg 18622665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 20539712 - 20539631
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgt-----cgagacacgcctaatccgaggagtacagttcgtgcttcatagg 80  Q
    |||||| |||||| ||||||||||||||||| |||||     |||||||||||| |||||||||||   || |||||||||||||    
T  20539712 aaatcatataatttagtgtaattacaagtgtcggtgtcgtggcgagacacgcctgatccgaggagt---gtccgtgcttcatagg 20539631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 23058480 - 23058442
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  23058480 aaatcacataatccagtgtaattacaagtgtcggtgtcg 23058442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 30404888 - 30404858
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  30404888 aaatcacataattcagtgtaattacaagtgt 30404858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 30717568 - 30717538
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  30717568 aaatcacataattcagtgtaattacaagtgt 30717538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 33153445 - 33153475
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  33153445 aaatcacataattcagtgtaattacaagtgt 33153475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 37558998 - 37559036
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  37558998 aaatcacataattcaatgtaattacaagtgtcggtgtcg 37559036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 38117197 - 38117159
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  38117197 aaatcacatacttcggtgtaattacaagtgttggtgtcg 38117159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11223901 - 11223864
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtc 38  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  11223901 aaataacataattcagtgtaattacaagtgtcggtgtc 11223864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 29176528 - 29176495
Alignment:
Q  4 tcacataattcagtgtaattacaagtgttggtgt 37  Q
    ||||||||||||||||||||| ||||||||||||    
T  29176528 tcacataattcagtgtaattataagtgttggtgt 29176495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 44635520 - 44635557
Alignment:
Q  2 aatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  44635520 aatcacgtaattcagtgtaattacaagtgtcggtgtcg 44635557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 974770 - 974806
Alignment:
Q  3 atcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  974770 atcacattattcagtgtaattacaagtgtcggtgtcg 974806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 21624294 - 21624326
Alignment:
Q  7 cataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||| |||||||    
T  21624294 cataattcagtgtaattacaagtgtcggtgtcg 21624326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 7801194 - 7801134
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcgagacacgcctaatccgaggagt 61  Q
    |||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| ||||    
T  7801194 aaatcacataattcagcgtaattacaagtgtcggtgtcgggacacgcctaatccgaagagt 7801134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 426552 - 426475
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcgagacacgcctaatccgaggagtacagttcgtgcttcataggat 82  Q
    ||||||||||||| | ||||||||||||||| ||||||| ||||||||||||| |||||||   || |||||||||||||||    
T  426552 aaatcacataattaaatgtaattacaagtgtcggtgtcg-gacacgcctaatctgaggagt---gtccgtgcttcataggat 426475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 8777011 - 8776973
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  8777011 aaatcacaaaattcagtgtaattacaagtgttggtgtcg 8776973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 9911566 - 9911528
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  9911566 aaatcacataattcagtgtaattacaagtgtcggtgtcg 9911528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 10770712 - 10770674
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  10770712 aaatcacataattcagtgtaattacaagtgtcggtgtcg 10770674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 16766718 - 16766756
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  16766718 aaatcacataattcagtgtaattacaagtgtcggtgtcg 16766756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28152119 - 28152157
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  28152119 aaatcacataattcagtgtaattacaagtgtcggtgtcg 28152157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 32511704 - 32511666
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  32511704 aaatcacataattcagtgtaattataagtgttggtgtcg 32511666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 34595155 - 34595193
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  34595155 aaatcacataattcagtgtaattacaagtgtcggtgtcg 34595193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 7027263 - 7027317
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcgagacacgcctaatccgag 57  Q
    |||||||||||||||||||||||| | |||| ||||||  |||||||||||||||||    
T  7027263 aaatcacataattcagtgtaattatatgtgtcggtgtc--gacacgcctaatccgag 7027317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 5732548 - 5732489
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcgagacacgcctaatccgaggagt 61  Q
    |||||||||| || |||||||||| | |||| ||||||| |||||||||||||||||||||    
T  5732548 aaatcacatattttagtgtaattatatgtgtcggtgtcg-gacacgcctaatccgaggagt 5732489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9522912 - 9522948
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgt 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  9522912 aaatcacataattcagtgtaattacaagtgtcggtgt 9522948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 5970146 - 5970108
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  5970146 aaatcacataattcagtgtaattacaaatgtgggtgtcg 5970108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 7977868 - 7977830
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  7977868 aaattacataattcagtgtaattacaagtgtcggtgtcg 7977830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 8714001 - 8714039
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  8714001 aaatcacataattcagtgtaattacaaatgtgggtgtcg 8714039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 9107408 - 9107370
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  9107408 aaatcacaaaattcagtgtaattacaagtgtcggtgtcg 9107370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28715316 - 28715354
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  28715316 aaatgacataattcagtgtaattacaagtgtcggtgtcg 28715354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 31384941 - 31384971
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  31384941 aaatcacataattcagtgtaattacaagtgt 31384971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 31429041 - 31429004
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtc 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  31429041 aaatcacataattcagtgtaattacaaatgtaggtgtc 31429004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 8365555 - 8365519
Alignment:
Q  3 atcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||| |||||||||||||||| |||||||    
T  8365555 atcacataattcggtgtaattacaagtgtcggtgtcg 8365519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16833329 - 16833365
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgt 37  Q
    |||||||||| |||||||||||||||||||| |||||    
T  16833329 aaatcacatacttcagtgtaattacaagtgtcggtgt 16833365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17435220 - 17435256
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgt 37  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  17435220 aaattacataattcagtgtaattacaagtgttagtgt 17435256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 20576665 - 20576633
Alignment:
Q  7 cataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||||||||| ||||||||||||||    
T  20576665 cataattcagtgtaattataagtgttggtgtcg 20576633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 46703 - 46761
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcgagacacgcctaatccgaggagt 61  Q
    ||||||||||||||||||||||||||| ||| ||||||  |||||||||||||||||||||    
T  46703 aaatcacataattcagtgtaattacaaatgtcggtgtc--gacacgcctaatccgaggagt 46761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25481923 - 25481961
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25481923 aaatcacataattcagtgtaattacaagtgttggtgtcg 25481961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 27945062 - 27945122
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcgagacacgcctaatccgaggagt 61  Q
    |||| |||||||||||||||||||||||||| ||||||| | |||||||||  ||||||||    
T  27945062 aaattacataattcagtgtaattacaagtgtcggtgtcgtgtcacgcctaactcgaggagt 27945122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 18039020 - 18039058
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  18039020 aaatcacataattcagtgtaattacaagtgtcggtgtcg 18039058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 21560524 - 21560562
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  21560524 aaatcacataattcagtgtaattacaagtgtcggtgtcg 21560562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 24339663 - 24339701
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  24339663 aaatcacataattcagtgtaattacaagtgtcggtgtcg 24339701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 38143244 - 38143303
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcgagacacgcctaatccgaggagt 61  Q
    ||||||||||||| | |||||||| | ||||||||||| |||||| |||||||||||||||    
T  38143244 aaatcacataatttaatgtaattatatgtgttggtgtc-agacacacctaatccgaggagt 38143303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 3721114 - 3721172
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcgagacacgcctaatccgaggag 60  Q
    ||||||||||||| ||| |||||| | |||| ||||||| ||||||||||||||||||||    
T  3721114 aaatcacataatttagtataattatatgtgtcggtgtcg-gacacgcctaatccgaggag 3721172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 2334271 - 2334309
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  2334271 aaatcacataatttagtgtaattacaagtgtcggtgtcg 2334309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 3991345 - 3991383
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  3991345 aaatcacataattcagtataattacaagtgtcggtgtcg 3991383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 5409874 - 5409836
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  5409874 aaatcacataattcagtgcaattacaagtgtcggtgtcg 5409836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 39
Target Start/End: Original strand, 7058455 - 7058485
Alignment:
Q  9 taattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||||||||||||||||||||||    
T  7058455 taattcagtgtaattacaagtgttggtgtcg 7058485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 9408372 - 9408334
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  9408372 aaatcacataatttagtgtaattacaagtgtcggtgtcg 9408334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 9778521 - 9778559
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  9778521 aaatcacataattcagtataattacaagtgtcggtgtcg 9778559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 21880173 - 21880211
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  21880173 aaattacataattcagtgtaattacaagtgtcggtgtcg 21880211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 26033499 - 26033469
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  26033499 aaatcacataattcagtgtaattacaagtgt 26033469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 32094058 - 32094020
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  32094058 aaatcacataattcagtgtaattacaaatgtcggtgtcg 32094020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7438727 - 7438764
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtc 38  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  7438727 aaatcacataattcaatgtaattacaagtgtcggtgtc 7438764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 13557779 - 13557750
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtg 30  Q
    ||||||||||||||||||||||||||||||    
T  13557779 aaatcacataattcagtgtaattacaagtg 13557750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4921 - 4884
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4921 aaatcacataattcagtgtaattacaagtgttggtgtc 4884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 715645 - 715608
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  715645 aaatcacataattcagtgtaattacaagtgttggtgtc 715608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 752971 - 752934
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  752971 aaatcacataattcagtgtaattacaagtgttggtgtc 752934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 11596390 - 11596352
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  11596390 aaatcacataattcagtgtaattacaagtgtaggtgtcg 11596352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 12797376 - 12797338
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  12797376 aaatcacataattcagtgtaattacaagtgtcggtgtcg 12797338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 42640550 - 42640588
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  42640550 aaatcacataattcagtgtaattacaagtgtcggtgtcg 42640588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 19482691 - 19482727
Alignment:
Q  3 atcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||| ||||||||||||||||||||||||    
T  19482691 atcacataattcggtgtaattacaagtgttggtgtcg 19482727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29205465 - 29205501
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgt 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  29205465 aaatcacataattcagtgtaattacaagtgtcggtgt 29205501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 30298968 - 30299051
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgt-----cgagacacgcctaatccgaggagtacagttcgtgcttcataggat 82  Q
    |||| |||||||||||||||||||||||||| |||||     || |||||| ||||||||||||||   || |||||||||||||||    
T  30298968 aaatgacataattcagtgtaattacaagtgtcggtgtcgtgccgggacacgtctaatccgaggagt---gtccgtgcttcataggat 30299051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 30327836 - 30327919
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgt-----cgagacacgcctaatccgaggagtacagttcgtgcttcataggat 82  Q
    |||| |||||||||||||||||||||||||| |||||     || |||||| ||||||||||||||   || |||||||||||||||    
T  30327836 aaatgacataattcagtgtaattacaagtgtcggtgtcgtgccgggacacgtctaatccgaggagt---gtccgtgcttcataggat 30327919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 40481657 - 40481688
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgtt 32  Q
    ||||||||||||||||||||||||||||||||    
T  40481657 aaatcacataattcagtgtaattacaagtgtt 40481688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6485649 - 6485603
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcgagacacgc 47  Q
    ||||||||||||| ||||||||||||||||| ||||| |||| ||||    
T  6485649 aaatcacataatttagtgtaattacaagtgtcggtgtagagatacgc 6485603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 6879503 - 6879465
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  6879503 aaatcacataattaagtgtaattacaagtgtcggtgtcg 6879465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 16073415 - 16073453
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  16073415 aaatcgcataattcagtgtaattacaagtgtcggtgtcg 16073453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 21945524 - 21945562
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  21945524 aaatgacataattcagtgtaattacaagtgtcggtgtcg 21945562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 23293024 - 23292986
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  23293024 aaatcacataattcagtataattacaagtgtcggtgtcg 23292986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 28964286 - 28964256
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  28964286 aaatcacataattcagtgtaattacaagtgt 28964256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 49431047 - 49431085
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  49431047 aaatcacataattcagtgtaattaaaagtgtcggtgtcg 49431085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 54580061 - 54580023
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  54580061 aaatcacataattcagtgtaattataagtgtcggtgtcg 54580023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 15029788 - 15029824
Alignment:
Q  3 atcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||||||||||||| | ||||||||||||    
T  15029788 atcacataattcagtgtaattatatgtgttggtgtcg 15029824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 28000779 - 28000743
Alignment:
Q  2 aatcacataattcagtgtaattacaagtgttggtgtc 38  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  28000779 aatcatataattcagtgtaattacaagtgtcggtgtc 28000743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 7928471 - 7928530
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcgagacacgcctaatccgaggagt 61  Q
    |||||||||||||||||||||||| | |||| ||||||| ||||||||||||| |||||||    
T  7928471 aaatcacataattcagtgtaattatatgtgtcggtgtcg-gacacgcctaatctgaggagt 7928530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 4987329 - 4987294
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  4987329 aaatcacataattcagtgtaattacaagtgttggtg 4987294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 25948925 - 25948887
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  25948925 aaatcacataattcagtgtaattataagtgttggtgtcg 25948887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28918022 - 28918060
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  28918022 aaatcacataattcagtgtaattacaagtgtcggtgtcg 28918060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 21257024 - 21256963
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg-agacacgcctaatccgaggagt 61  Q
    ||||||||||||||||| ||||||||||||| ||| |||  ||||| |||||||||||||||    
T  21257024 aaatcacataattcagtataattacaagtgtcggtatcgtggacacacctaatccgaggagt 21256963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 25775531 - 25775568
Alignment:
Q  2 aatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||||||||||||||||||||| |||||||    
T  25775531 aatcacataattcagtgtaattacaagtgtcggtgtcg 25775568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 26508131 - 26508166
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtg 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  26508131 aaatcacataattcagtgtaattacaagtgtcggtg 26508166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 1509560 - 1509598
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  1509560 aaatcacataatttagtgtaattacaagtgtcggtgtcg 1509598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 7171522 - 7171560
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  7171522 aaatcatataattcggtgtaattacaagtgttggtgtcg 7171560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 8587059 - 8587021
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  8587059 aaatcacataattaagtgtaattacaagtgtcggtgtcg 8587021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 8593158 - 8593196
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  8593158 aaatcacataattcagtataattacaagtgtcggtgtcg 8593196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 10954973 - 10955011
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  10954973 aaatcacataattcagtgtaatcacaagtgtcggtgtcg 10955011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 14209134 - 14209164
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  14209134 aaatcacataattcagtgtaattacaagtgt 14209164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 16789033 - 16789071
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  16789033 aaatcatataattcagtgtaattataagtgttggtgtcg 16789071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 27505267 - 27505305
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  27505267 aaatcacataattaagtgtaattacaagtgtcggtgtcg 27505305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28812536 - 28812574
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  28812536 aaatcacataattcagtgtagttacaagtgtcggtgtcg 28812574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 34185161 - 34185123
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  34185161 aaatcacacaattcagtgtaattacaagtgtcggtgtcg 34185123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 34910338 - 34910376
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||||||||||||||||||| || |||||||    
T  34910338 aaatcacataattcagtgtaattacaagagtcggtgtcg 34910376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 35994776 - 35994746
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  35994776 aaatcacataattcagtgtaattacaagtgt 35994746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 49651824 - 49651786
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  49651824 aaatcacataattcactgtaattacaagtgtcggtgtcg 49651786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 51206391 - 51206353
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  51206391 aaatcacataattcagtgtaaatacaagtgtcggtgtcg 51206353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 55401096 - 55401134
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  55401096 aaatcacataatttagtgtaattacaagtgtcggtgtcg 55401134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20503486 - 20503522
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgt 37  Q
    |||| |||||||||||||||||||||||||| |||||    
T  20503486 aaatgacataattcagtgtaattacaagtgtcggtgt 20503522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 31672933 - 31672879
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcgagacacgcctaatccga 56  Q
    ||||||| ||||||||||||||||||||| | ||||||| ||||||||||||||||    
T  31672933 aaatcacttaattcagtgtaattacaagtctcggtgtcg-gacacgcctaatccga 31672879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 113320 - 113358
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  113320 aaatcacataattcagtgtaattacaagtgtaggtgtcg 113358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 18337350 - 18337388
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  18337350 aaatcacataattcagtgtaattacaagtgtcggtgtcg 18337388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 24577224 - 24577186
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  24577224 aaatcacataattcagtgtaattacaagtgtcggtgtcg 24577186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 47989518 - 47989556
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  47989518 aaatcacataattcagtgtaattacaagtgtcggtgtcg 47989556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 51410046 - 51410084
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  51410046 aaatcacataattcagtgtaattacaagtgtcggtgtcg 51410084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1815278 - 1815315
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtc 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  1815278 aaatcacataattcagtgtaattacaagtgtcggtgtc 1815315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40258971 - 40258934
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtc 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  40258971 aaatcacataattcagtgtaattacaagtgtcggtgtc 40258934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 1486747 - 1486709
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  1486747 aaatcacataattcagtgtaattataagtgtcggtgtcg 1486709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 1705030 - 1704992
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||||||| |||||||||||||| |||||||    
T  1705030 aaatcacataattcagggtaattacaagtgtcggtgtcg 1704992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 5944304 - 5944342
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  5944304 aaatcacataattcagtgtaattataagtgtcggtgtcg 5944342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6332691 - 6332729
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  6332691 aaatcacataattcagtgtaattacaagtatcggtgtcg 6332729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 6612209 - 6612171
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  6612209 aaattacataattcagtgtaattacaagtgtcggtgtcg 6612171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13011253 - 13011219
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggt 35  Q
    ||||||||||||| |||||||||||||||||||||    
T  13011253 aaatcacataattaagtgtaattacaagtgttggt 13011219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 13436479 - 13436517
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  13436479 aaatcacataattcagtgtaattatatgtgttggtgtcg 13436517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 22515925 - 22515887
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  22515925 aaatcacataatttagtgtaattacaagtgtcggtgtcg 22515887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 22881654 - 22881616
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  22881654 aaatcacataatttagtgtaattacaagtgtcggtgtcg 22881616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 31015064 - 31015094
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  31015064 aaatcacataattcagtgtaattacaagtgt 31015094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 31694748 - 31694710
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  31694748 aaatcacataattcagtataattacaagtgtcggtgtcg 31694710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 38078699 - 38078661
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  38078699 aaatcacataattcaatgtaattacaagtgtcggtgtcg 38078661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 42359487 - 42359449
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  42359487 aaatcacaaaattcagtgtaattacaagtgtcggtgtcg 42359449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 8117059 - 8117092
Alignment:
Q  5 cacataattcagtgtaattacaagtgttggtgtc 38  Q
    ||||||||||||||||||||||||| ||||||||    
T  8117059 cacataattcagtgtaattacaagtattggtgtc 8117092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 19058889 - 19058856
Alignment:
Q  6 acataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||||||||||||||||| |||||||    
T  19058889 acataattcagtgtaattacaagtgtcggtgtcg 19058856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 27471600 - 27471567
Alignment:
Q  5 cacataattcagtgtaattacaagtgttggtgtc 38  Q
    |||||||||||||||||||||| |||||||||||    
T  27471600 cacataattcagtgtaattacatgtgttggtgtc 27471567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28273126 - 28273089
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtc 38  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  28273126 aaatcatataattcagtgtaattacaagtgtcggtgtc 28273089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21378599 - 21378635
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgt 37  Q
    |||| |||||||||||||||||||||||||| |||||    
T  21378599 aaattacataattcagtgtaattacaagtgtcggtgt 21378635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 24334737 - 24334705
Alignment:
Q  7 cataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||| |||||||    
T  24334737 cataattcagtgtaattacaagtgtcggtgtcg 24334705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32461501 - 32461465
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgt 37  Q
    ||||||||||||| | |||||||||||||||||||||    
T  32461501 aaatcacataatttaatgtaattacaagtgttggtgt 32461465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 23791 - 23829
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  23791 aaatcacataattcagtgtaattacaagtgtcggtgtcg 23829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 4948673 - 4948711
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  4948673 aaatcacataattcagtgtaattacaagtgtcggtgtcg 4948711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 22596015 - 22596053
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  22596015 aaataacataattcagtgtaattacaagtgttggtgtcg 22596053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25566862 - 25566900
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  25566862 aaatcacataattcagtgtaattacaagtgtcggtgtcg 25566900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7442866 - 7442902
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgt 37  Q
    |||| ||||||||||||||||||||||||||||||||    
T  7442866 aaattacataattcagtgtaattacaagtgttggtgt 7442902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40332212 - 40332248
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgt 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  40332212 aaatcacataattcagtgtaattacaagtgtcggtgt 40332248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 24669454 - 24669493
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcga 40  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  24669454 aaattacataattcagtgtaattacaagtgtcggtgtcga 24669493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 31514894 - 31514958
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgt----cgagacacgcctaatccgaggagt 61  Q
    |||||||||||||||| |||| |||||||||||||||    |  |||||||||||||||||||||    
T  31514894 aaatcacataattcagcgtaactacaagtgttggtgttggacacgacacgcctaatccgaggagt 31514958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2572094 - 2572056
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  2572094 aaatcacataatttagtgtaattacaagtgtcggtgtcg 2572056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 8342993 - 8343031
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  8342993 aaatcacataatttagtgtaattacaagtgtcggtgtcg 8343031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 17468546 - 17468508
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  17468546 aaatcacataatgcggtgtaattacaagtgttggtgtcg 17468508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 18407740 - 18407770
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  18407740 aaatcacataattcagtgtaattacaagtgt 18407770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 20873090 - 20873128
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  20873090 aaatcacataatttagtgtaattacaagtgtcggtgtcg 20873128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 24613541 - 24613579
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  24613541 aaatcacataattaagtgtaattacaagtgtcggtgtcg 24613579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 36450792 - 36450754
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  36450792 aaatcacagaattcagtgtaattacaagtgtaggtgtcg 36450754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 31557017 - 31557054
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtc 38  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  31557017 aaatcacataattcagtgtaattacaagtttcggtgtc 31557054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 9414912 - 9414876
Alignment:
Q  2 aatcacataattcagtgtaattacaagtgttggtgtc 38  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  9414912 aatcacataattcagtgcaattataagtgttggtgtc 9414876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11803280 - 11803316
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgt 37  Q
    |||||||||||||||||||||||| | ||||||||||    
T  11803280 aaatcacataattcagtgtaattatatgtgttggtgt 11803316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 30077423 - 30077395
Alignment:
Q  3 atcacataattcagtgtaattacaagtgt 31  Q
    |||||||||||||||||||||||||||||    
T  30077423 atcacataattcagtgtaattacaagtgt 30077395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6247643 - 6247681
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  6247643 aaatcacataattcagtgtaattacaagtgtcggtgtcg 6247681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 15884009 - 15884047
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  15884009 aaatcacataattcagtgtaattacaagtgtcggtgtcg 15884047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 21191094 - 21191056
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  21191094 aaatcacataattcagtgtaattacaagtgtcggtgtcg 21191056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 8420048 - 8420108
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcgagacacgcctaatccgaggagta 62  Q
    |||| |||||||||| ||||||||||||||| ||||||| ||| |||||||| |||||||||    
T  8420048 aaataacataattcaatgtaattacaagtgtcggtgtcg-gacgcgcctaattcgaggagta 8420108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 43001821 - 43001856
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtg 36  Q
    |||| |||||||||||||||||||||||||||||||    
T  43001821 aaattacataattcagtgtaattacaagtgttggtg 43001856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 7218305 - 7218275
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  7218305 aaatcacataattcagtgtaattacaagtgt 7218275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 13287437 - 13287399
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  13287437 aaatcacataattcagtgtaactacaagtgtcggtgtcg 13287399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 21351940 - 21351906
Alignment:
Q  4 tcacataattcagtgtaattacaagtgttggtgtc 38  Q
    |||||||||||||||||||||||||||| ||||||    
T  21351940 tcacataattcagtgtaattacaagtgtcggtgtc 21351906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 21576783 - 21576753
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  21576783 aaatcacataattcagtgtaattacaagtgt 21576753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 33178046 - 33178084
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  33178046 aaatcacataatttagtgtaattacaagtgtcggtgtcg 33178084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 39698562 - 39698592
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  39698562 aaatcacataattcagtgtaattacaagtgt 39698592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 21542056 - 21542089
Alignment:
Q  6 acataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||||||||||||||||| |||||||    
T  21542056 acataattcagtgtaattacaagtgtcggtgtcg 21542089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 42893381 - 42893418
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtc 38  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  42893381 aaatcacataatccagtgtaattacaagtgtcggtgtc 42893418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 4105282 - 4105310
Alignment:
Q  3 atcacataattcagtgtaattacaagtgt 31  Q
    |||||||||||||||||||||||||||||    
T  4105282 atcacataattcagtgtaattacaagtgt 4105310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 51832 - 51864
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttg 33  Q
    |||||||||||||||||||||||||||||||||    
T  51832 aaatcacataattcagtgtaattacaagtgttg 51864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 123650 - 123686
Alignment:
Q  2 aatcacataattcagtgtaattacaagtgttggtgtc 38  Q
    |||||||||||||||||||||||||||||| ||||||    
T  123650 aatcacataattcagtgtaattacaagtgtcggtgtc 123686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 19596 - 19627
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgtt 32  Q
    ||||||||||||||||||||||||||||||||    
T  19596 aaatcacataattcagtgtaattacaagtgtt 19627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 130503 - 130538
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtg 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  130503 aaatcacataattcagtgtaattacaagtgtcggtg 130538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 500 - 462
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  500 aaatcacaaaattcagtgtaattacaagtgtcggtgtcg 462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 23441 - 23479
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  23441 aaatcacataattcagtgtaattataagtgtcggtgtcg 23479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 3887 - 3857
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  3887 aaatcacataattcagtgtaattacaagtgt 3857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 14551 - 14580
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtg 30  Q
    ||||||||||||||||||||||||||||||    
T  14551 aaatcacataattcagtgtaattacaagtg 14580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 45563 - 45530
Alignment:
Q  6 acataattcagtgtaattacaagtgttggtgtcg 39  Q
    |||||||||||||||||||||||||| |||||||    
T  45563 acataattcagtgtaattacaagtgtcggtgtcg 45530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17787 - 17750
Alignment:
Q  1 aaatcacataattcagtgtaattacaagtgttggtgtc 38  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  17787 aaatcacataatttagtgtaattacaagtgtcggtgtc 17750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University