View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8758_low_16 (Length: 396)
Name: NF8758_low_16
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 41325003 - 41325351
Alignment:
| Q |
18 |
aagaagtggggagtctaagttcgaactccgacccctaaaaatatgttttgaaattggaagacactaactaattaattaccacaatggtgagacccctaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41325003 |
aagaagtggggagtctaagttcgaactccgacccctaaaaatatgttttgaaattggaagacactaactaattaattaccacaatggtgagacccctaaa |
41325102 |
T |
|
| Q |
118 |
tgcatcaagtgtagcaaccctctttgtcttttgcttaaccagttcaggctgctgatccacaggtttagccattgtgtatgtgccatgctgatcaatattt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41325103 |
tgcatcaagtgtagcaaccctctttgtcttttgcttaaccagttcaggctgctgatccacaggcttagccattgtgtatgtgccatgctgatcaacattt |
41325202 |
T |
|
| Q |
218 |
gaatctacaatattaatggtttcttgctccttcaactcatctttagcatcttcatgatccaattgtaatttgaggccttcttccattctcttagcttcat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41325203 |
gaatctacaatattaatggtttcttgctccttcaactcatctttagcatcttcatgatccaattgtaatttgaggccttcttccattctcttagcttcat |
41325302 |
T |
|
| Q |
318 |
ccatgaatagaatagtgatgaatgatattcaacaattttttcaaacgta |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41325303 |
ccatgaatagaatagtgatgaatgatattcaacaaatttttcaaacgta |
41325351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 41310317 - 41310378
Alignment:
| Q |
95 |
accacaatggtgagacccctaaatgcatcaagtgtagcaaccctctttgtcttttgcttaac |
156 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
41310317 |
accacaatggtgaggcccctaaatgcatcaagtgttgcaacccgttttgtcttttgcttaac |
41310378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University