View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8758_low_18 (Length: 394)
Name: NF8758_low_18
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 8 - 381
Target Start/End: Complemental strand, 43114041 - 43113668
Alignment:
| Q |
8 |
aagcagagaaaagtaaatgttgataaattagtagaagaaaagtttctgaattcagatgatgagaaaagtaatgaagaaaatgaagcacaagaagaagtta |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43114041 |
aagcaaagaaaagtaaatgttgataaattagtagaagaaaagtttctgaattcagatgatgagaaaagtaatgaagaaaatgaagcacaagaagaagtta |
43113942 |
T |
|
| Q |
108 |
atatcgatggatcagaaagtgaaagccaagaagatcatttgtcaacttctgaaggatctgaagtagatcatagccatgattactcagatggatcaatttc |
207 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43113941 |
atattgatggatcagaaagtgaaagccaagaagatcatttgtcaacttctgaaggatctgaagtagatcatagccatgattactcagatggatcaatttc |
43113842 |
T |
|
| Q |
208 |
tgatgaagaaagtctcattgaaattgcacttccaagtggaaactatgtgaatatgcagaaagatgaatcagattactatagtttgcagcagaagaaaaag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43113841 |
tgatgaagaaagtctcattgaaattgcacttccaagtggaaactatgtgaatatgcagaaagatgaatcagattactatagtttgcagcagaagaaaaag |
43113742 |
T |
|
| Q |
308 |
gagttatttggtgatgcacttttcagtcaacaaagtctaatggagttgttatcagaattaaatgaagtgaatga |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43113741 |
gagttatttggtgatgcacttttcagtcaacaaagtctaatggagttgttatcagaattaaatgaagtgaatga |
43113668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 37362119 - 37362065
Alignment:
| Q |
193 |
agatggatcaatttctgatgaagaaagtctcattgaaattgcacttccaagtgga |
247 |
Q |
| |
|
|||||| |||||||||||||| |||| |||||| ||||||||||||||||||||| |
|
|
| T |
37362119 |
agatgggtcaatttctgatgaggaaaatctcatagaaattgcacttccaagtgga |
37362065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University