View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8758_low_19 (Length: 391)
Name: NF8758_low_19
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 41755403 - 41755056
Alignment:
| Q |
19 |
acatttgtacttttgaataaaccaataaataggacgtataaatgatttattttatatattaatattaaagagatggggctgtcaatatttattgatagtc |
118 |
Q |
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| T |
41755403 |
acatttgtacttttgaataaaccaataaataggacgtataaatgatttattttatatattaa------agagatggggctgtcaatatttattgatagtc |
41755310 |
T |
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| Q |
119 |
aatacaaaaatttcacaatagaaattacttaatcattattgacccatttctggtcaactctgtgacctttctatctatagcaacctacatcaaccat--g |
216 |
Q |
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| T |
41755309 |
aatacaaaaatttcacaatagaaattacttaatcattattgacccatttctggtcaactctgtgacctttctatctatagtaacctacatcaaccatttg |
41755210 |
T |
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| Q |
217 |
tgcttataaataaataggatagaagagaatgatacactttcacatcaccaaattgtttatgttcatcaatggcaaagcaactcataatcatgcttctccc |
316 |
Q |
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| T |
41755209 |
tgcttataaata----ggataggagagaatgatacactttcacatcaccaaattgtttatgttcatcaatggcaaagcaactcataatcatgcttctccc |
41755114 |
T |
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| Q |
317 |
tttgctttttctccttttcattttatcaggtattaacgcatatattcatagccaacat |
374 |
Q |
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| T |
41755113 |
tttgctttttctccttttcattttatcaggtattaacgcatatattcatagccaacat |
41755056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 279 - 351
Target Start/End: Complemental strand, 41761069 - 41760997
Alignment:
| Q |
279 |
tcatcaatggcaaagcaactcataatcatgcttctccctttgctttttctccttttcattttatcaggtatta |
351 |
Q |
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| T |
41761069 |
tcatcaatggcgaagcaactcataatcatgcttcttcctttgctccttcttcttttcattttatcaggtatta |
41760997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 41761372 - 41761312
Alignment:
| Q |
81 |
tattaaagagatggggctgtcaatatttattgatagtcaatacaaaaatttcacaatagaa |
141 |
Q |
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| T |
41761372 |
tattaaagagatgggtttgtcaatatttattgatagtcaacacaaaatttttagaatagaa |
41761312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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