View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8758_low_2 (Length: 688)
Name: NF8758_low_2
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_low_2 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 21 - 688
Target Start/End: Complemental strand, 44768384 - 44767744
Alignment:
| Q |
21 |
tctggtgtgtttcggatagcttgatgcctgtcagtggggagctgttattgctgttctgtgcaggtttnnnnnnntcaggtttttctgtgctttctttgct |
120 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| |
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| T |
44768384 |
tctggtgtgtttcggatagcttgatgcctgtcagtggggagctgttattgctgttctctgcaggtttgggggggtctggtttttctgtgctttctttgct |
44768285 |
T |
|
| Q |
121 |
tgctgatagggtgtgcttgtgccgctttaggctttagtttttggggtgtgtttttgggcagaggttcctcatatatacggattttggtgttccaactttg |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44768284 |
tgctgatagggtgtgcttgtgccgctttaggctttagtttttggg-------------cagaggttcctcatatatacggattttggtgtttcaactttg |
44768198 |
T |
|
| Q |
221 |
ctacgtgttccgcatatatacgacacctttgtatttttctctttgtgatccaagcttatgtgattctttcacttgcttgcttaataaattttgttgttcc |
320 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44768197 |
ctatgtgttccgcatatatacgacacctttgtatttttctctttgtgattcaagcttatgtgattctttcacttgcttgcttaataaattttgttgttcc |
44768098 |
T |
|
| Q |
321 |
aaatnnnnnnnctaaaactaaaggactaaatagttagataagagattaatttaaagatattttaattaattttatcagtttaacgactaattaacgagac |
420 |
Q |
| |
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||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44768097 |
aaa--------------ctaaaggactaaatagttagatgagagattaatttaaagatattttaattaattttatcagtttaacgactaattaacgagac |
44768012 |
T |
|
| Q |
421 |
ggtgatagtctaaagatgtaactagctcttaatagtt-ccaaaaacttatggtaagatggttcgtaccatgaatatgaagtacattaattaacaaactcc |
519 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44768011 |
ggtgatagtctaaagatgtaactagctcttaatagttcccaaaaacttatggtaagatggttcgtaccataaatatgaagtacattaattaacaaactcc |
44767912 |
T |
|
| Q |
520 |
gaacaacgtatgttgtgagaataccatccatctacctcttcttacaaaattctttatgttattagttttcaaaactagaatgtcttcatttccccgcatc |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44767911 |
gaacaacgtatgttgtgagaataccatccatctacctc-tcttacaaaattctttatgttattagttttcaaaactagaatgtctttatttccccgcatc |
44767813 |
T |
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| Q |
620 |
gttatccttaagaaaaccatcaactacaccgactttcttgcaaatttgagtcactgtagttctttatga |
688 |
Q |
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||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44767812 |
gttatccttaagaaagccatcaactataccgactttcttgcaaatttgagtcattgtagttctttatga |
44767744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 171 - 293
Target Start/End: Complemental strand, 9404823 - 9404701
Alignment:
| Q |
171 |
tttttgggcagaggttcctcatatatacggattttggtgttccaactttgctacgtgttccgcatatatacgacacctttgtatttttctctttgtgatc |
270 |
Q |
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|||||||| ||||||||| |||||||| ||||||||||||||| || ||| || ||||||||||||| | || ||||||||||| |||||||||||| || |
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| T |
9404823 |
tttttgggtagaggttccgcatatataaggattttggtgttcctacattgttaggtgttccgcatattttcggcacctttgtatgtttctctttgtggtc |
9404724 |
T |
|
| Q |
271 |
caagcttatgtgattctttcact |
293 |
Q |
| |
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| ||||| ||| ||||||||||| |
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| T |
9404723 |
ccagcttttgttattctttcact |
9404701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 171 - 293
Target Start/End: Original strand, 1993471 - 1993593
Alignment:
| Q |
171 |
tttttgggcagaggttcctcatatatacggattttggtgttccaactttgctacgtgttccgcatatatacgacacctttgtatttttctctttgtgatc |
270 |
Q |
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|||||||| ||||||||| |||||||| ||||||||||||||| || ||| || ||||||||||||| | || ||||||||||| ||| |||||||| || |
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| T |
1993471 |
tttttgggtagaggttccacatatataaggattttggtgttcctacattgttaggtgttccgcatatttccggcacctttgtatgtttttctttgtggtc |
1993570 |
T |
|
| Q |
271 |
caagcttatgtgattctttcact |
293 |
Q |
| |
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|||||| ||| ||||||||||| |
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| T |
1993571 |
gaagcttttgttattctttcact |
1993593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 171 - 293
Target Start/End: Original strand, 8960979 - 8961101
Alignment:
| Q |
171 |
tttttgggcagaggttcctcatatatacggattttggtgttccaactttgctacgtgttccgcatatatacgacacctttgtatttttctctttgtgatc |
270 |
Q |
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|||||||| ||||||||| |||||||| |||||||||||||| || ||| || ||||||||||||| | || ||||||||||| ||||||||||| || |
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| T |
8960979 |
tttttgggtagaggttccgcatatataaagattttggtgttcctacattgttaggtgttccgcatatttccggcacctttgtatgtttctctttgtagtc |
8961078 |
T |
|
| Q |
271 |
caagcttatgtgattctttcact |
293 |
Q |
| |
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||||||| ||| ||||||||||| |
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| T |
8961079 |
caagcttttgttattctttcact |
8961101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 10681962 - 10681870
Alignment:
| Q |
173 |
tttgggcagaggttcctcatatatacggatttt-ggtgttccaactttgctacgtgttccgcatatatacgacacctttgtatttttctcttt |
264 |
Q |
| |
|
|||||| | |||||||||||||||| ||||||| |||||||| || ||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
10681962 |
tttgggtaaaggttcctcatatatatggatttttggtgttcctaccttgttaggtgttccgcatatatacgacacctttgtatttttctcttt |
10681870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 171 - 293
Target Start/End: Original strand, 3298829 - 3298948
Alignment:
| Q |
171 |
tttttgggcagaggttcctcatatatacggattttggtgttccaactttgctacgtgttccgcatatatacgacacctttgtatttttctctttgtgatc |
270 |
Q |
| |
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|||||||| ||||||||| |||||||| | ||||||||||||| || ||| || ||||||||||||| | || ||||||||||| ||||| |||| || |
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| T |
3298829 |
tttttgggtagaggttccacatatataag-attttggtgttcctacattgttaggtgttccgcatatttccggcacctttgtatgattctc--tgtggtc |
3298925 |
T |
|
| Q |
271 |
caagcttatgtgattctttcact |
293 |
Q |
| |
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||||||| ||||||||||||||| |
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| T |
3298926 |
caagcttttgtgattctttcact |
3298948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 10537272 - 10537193
Alignment:
| Q |
173 |
tttgggcagaggttcctcatatatacggatttt-ggtgttccaactttgctacgtgttccgcatatatacgacacctttg |
251 |
Q |
| |
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|||||| ||||| |||||||||||| ||||||| |||||||| || ||| || |||||||||||||||||| |||||||| |
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| T |
10537272 |
tttgggtagaggctcctcatatatatggatttttggtgttcctaccttgttatgtgttccgcatatatacggcacctttg |
10537193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 225 - 312
Target Start/End: Original strand, 36468152 - 36468240
Alignment:
| Q |
225 |
gtgttccgcatatatacgacacctttgtatttttctctttgtgatccaagcttatgtgattctttcacttgctt-gcttaataaatttt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||| | ||| || ||| ||||||||| | ||| |||||||||||||| |
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| T |
36468152 |
gtgttccgcatatatacgacacctttgtaattatctctttgtggttcaacgtttggtgtttctttcacctccttggcttaataaatttt |
36468240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 171 - 293
Target Start/End: Original strand, 44613856 - 44613978
Alignment:
| Q |
171 |
tttttgggcagaggttcctcatatatacggattttggtgttccaactttgctacgtgttccgcatatatacgacacctttgtatttttctctttgtgatc |
270 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||||||||||| | || ||| || ||||||||||||| | || ||||||||||| ||| | |||||| || |
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| T |
44613856 |
tttttgggtagaggttccacatatataaggattttggtgtgactacattgttaggtgttccgcatatttccggcacctttgtatgtttttgtttgtggtc |
44613955 |
T |
|
| Q |
271 |
caagcttatgtgattctttcact |
293 |
Q |
| |
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|||||| ||| ||||||||||| |
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| T |
44613956 |
gaagcttttgttattctttcact |
44613978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 45990 - 45892
Alignment:
| Q |
225 |
gtgttccgcatatatacgacacctttgtatttttctctttgtgatccaagcttatgtgattctttcacttgctt-gcttaataaattttgttgttccaaa |
323 |
Q |
| |
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|||||| ||||||||||| |||||||||| |||| ||||||| |||||| || ||||| |||||||| ||| ||||||||||||||| |||| |||| |
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| T |
45990 |
gtgttctgcatatatacggcacctttgta-atttccctttgtggtccaagttttggtgatggtttcactttcttggcttaataaattttgctgtttcaaa |
45892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 24526789 - 24526674
Alignment:
| Q |
158 |
tttttggggtgtgtttttgggcagaggttcctcatatatacggattttggtgttccaactttgctacgtgttccgcatatatacgacacctttgtatttt |
257 |
Q |
| |
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|||||||| || ||||||| ||||||||| ||||||||||||||| ||||| || | ||| || ||||| ||||||||| || ||||||||| | | |
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| T |
24526789 |
tttttgggttggttttttggatagaggttccacatatatacggatttaggtgtgcctattttttta-gtgtttcgcatatattcggtacctttgtaatgt |
24526691 |
T |
|
| Q |
258 |
tctctttgtgatccaag |
274 |
Q |
| |
|
||||||||| |||||| |
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|
| T |
24526690 |
cctctttgtggtccaag |
24526674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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