View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8758_low_20 (Length: 388)
Name: NF8758_low_20
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 25 - 254
Target Start/End: Original strand, 25552545 - 25552774
Alignment:
| Q |
25 |
ttaacgtgtttatttccttaacaaataccttaacctttaa-atacttgttaacaagattattttagaatgataacatagttgagatgtctttactatgtg |
123 |
Q |
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| T |
25552545 |
ttaacgtgtttatttccttaacaaataccttaacctttaagatacttgttaacaagattattttagaatgataacatagttgtgatgtctttactatgtg |
25552644 |
T |
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| Q |
124 |
tcattgtgggtcatattgtttacagcacaaagtgctacaagcaagctttatttgtcctaactgcttataacttgtcctaattcaaaattactagtgaatc |
223 |
Q |
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||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25552645 |
tcactgtgggtcatattgtttacatcacaaattgctacaagcaagctttatttgtcctaactgcttataacttgtcctaattcaaaattactagtgaatc |
25552744 |
T |
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| Q |
224 |
tcattgaataataggaatatcaaatatatat |
254 |
Q |
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| T |
25552745 |
tcgttgaat-ataggattatcaaatatatat |
25552774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 247 - 368
Target Start/End: Original strand, 25552803 - 25552924
Alignment:
| Q |
247 |
atatatatgacataaaataactgacattttgcatgacatatataacatgaccaacaaaagaattggaaccaagtttaaggaccactgacggcgtagtgat |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25552803 |
atatatatgacataaaataactgacattttgcatgacatatataacatgaccaacaaaagaattggaaccaagtttaaggaccactgacggcgtagtgat |
25552902 |
T |
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| Q |
347 |
tgatcaaagtacacgatctctg |
368 |
Q |
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| T |
25552903 |
tgatcaaagtacacgatctctg |
25552924 |
T |
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