View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8758_low_21 (Length: 378)
Name: NF8758_low_21
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 13 - 363
Target Start/End: Original strand, 33452520 - 33452874
Alignment:
| Q |
13 |
gagacgaaagaccttgtttgcggtccaagtttggtaatcaaacaaagtagtccaacccttttcatcaccaactacaaaatcttttgccacagccatggtt |
112 |
Q |
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| T |
33452520 |
gagacgaaagaccttgtttgcggtccaagtttggtaatcaaacaaagtagtccaacccttttcatctccaactacaaaatcttttgccacggccatggtt |
33452619 |
T |
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| Q |
113 |
gagaagatagtagcaatgagagaaaagaggaaaagagcacgagaaagagccatgtatgaagtactagtattgctctttctttgtttaatttggttacttt |
212 |
Q |
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| T |
33452620 |
gagaagatggaagcaatgagagcaaagagaaaaagagcacgagaaagagccatgtatgaagtactagtattgctctttctttgtttaatttggttacttt |
33452719 |
T |
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| Q |
213 |
ctataagagattaaatacag----atatatatatacacataaaatatcagggtgaggggggattgcaacaaacggctaaggacggcttggcagaatttga |
308 |
Q |
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| T |
33452720 |
ctataagagattaaatacagatatatatatatatacacataaaatatcagggtgaggggggattgcaacaaacggctatggacggcttggcagaatttga |
33452819 |
T |
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| Q |
309 |
atattaatttgatttaaccacaaatataatattgtatgcagacttgataagaaat |
363 |
Q |
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| T |
33452820 |
atattaatttgatttaaccacaaatataatattgcatgcagacttgataagaaat |
33452874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 13 - 318
Target Start/End: Original strand, 33442270 - 33442571
Alignment:
| Q |
13 |
gagacgaaagaccttgtttgcggtccaagtttggtaatcaaacaaagtagtccaacccttttcatcaccaactacaaaatcttttgccacagccatggtt |
112 |
Q |
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| T |
33442270 |
gagacgaaagaccttgtttgcggtccaagtttggtaatcaaacaaagtagtccaacccttttcatcaccaactacaaaatcttttgccacagccatggtt |
33442369 |
T |
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| Q |
113 |
gagaagatagtagcaatgagagaaaagaggaaaagagcacgagaaagagccatgtatgaagtactagtattgctctttctttgtttaatttggttacttt |
212 |
Q |
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| T |
33442370 |
gagaagatagtagcaatgaaagcaaagaggaaaagagcacgagaaagagccatagttgaagtactagtattgctctttctttgtttaattttgttactta |
33442469 |
T |
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| Q |
213 |
ctataagagattaaatacagatatatatatacacataaaatatcagggtgaggggggattgcaacaaacggctaaggacggcttggcagaatttgaatat |
312 |
Q |
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| T |
33442470 |
atataagagattgaatacgg--gtatatatacacatataatttcagggcaa--ggggattgtcacaaacggctaaggacggcttggcagaatttgaatat |
33442565 |
T |
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| Q |
313 |
taattt |
318 |
Q |
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|||||| |
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| T |
33442566 |
taattt |
33442571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 13 - 165
Target Start/End: Original strand, 33400055 - 33400207
Alignment:
| Q |
13 |
gagacgaaagaccttgtttgcggtccaagtttggtaatcaaaca-aagtagtccaacccttttcatcaccaactacaaaatcttttgccacagccatggt |
111 |
Q |
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||||||||||||||||||||| | ||||| ||||||||||| | |||| |||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
33400055 |
gagacgaaagaccttgtttgcagcccaagcttggtaatcaaccccaagt-gtccaaccactttcatctccaactacaaaatcttttgccacagccatggt |
33400153 |
T |
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| Q |
112 |
tgagaagatagtagcaatgagagaaaagaggaaaagagcacgagaaagagccat |
165 |
Q |
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| T |
33400154 |
tgagaagatagtagcaatgagagcaaagaggaaaagagaacgagaaagagccat |
33400207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 73 - 165
Target Start/End: Original strand, 33397030 - 33397122
Alignment:
| Q |
73 |
ttcatcaccaactacaaaatcttttgccacagccatggttgagaagatagtagcaatgagagaaaagaggaaaagagcacgagaaagagccat |
165 |
Q |
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| T |
33397030 |
ttcatctccaactacaaaatcttttgccacagccatggttgaaaagatagtagcaatgagagcaaagagaaaaagaacacgagaaagagccat |
33397122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 33442587 - 33442633
Alignment:
| Q |
300 |
agaatttgaatattaatttgatttaaccacaaa-tataatattgtat |
345 |
Q |
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| T |
33442587 |
agaatttgaatattaatttgatttaactacaaattataatatcgtat |
33442633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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