View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8758_low_23 (Length: 368)
Name: NF8758_low_23
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 6 - 344
Target Start/End: Original strand, 40896307 - 40896647
Alignment:
| Q |
6 |
ataaaaaataaagaagtcattatggtgttctaaacacgttgnnnnnnntgcttat--catccataatccattagattgtattattaactcggaattgaga |
103 |
Q |
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| T |
40896307 |
ataataaatagagaagtcattatggtgttctaaacacgttgaaaaaaatgcttatatcatccataatccattagattgtattattaactcggaattgaga |
40896406 |
T |
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| Q |
104 |
aggaagtggccttcctatattatatcttttgatatccaaacaggtcaataagaattccaagtttatacaaaaaatagagctaaatatcagtttgacttcc |
203 |
Q |
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| T |
40896407 |
aggaagtggccttcctatattatatcttttgatatccaaacaggtcaaaaagaattccaagtttatacaaaaaatagagctaaatatcagtttgacttcc |
40896506 |
T |
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| Q |
204 |
atctgccaatatgagatctgagatcagagatgtgcagtcaaaggtagttcaaaaaatcttagcggcagctaattctactcctctgctagcataggcaaca |
303 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| | ||||||||||||||||||||||||| |
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| T |
40896507 |
atctgccaatatgagatctgagatcagagatgcgcagtcaaaggtagttcaaaaaatcttagaggtagctaactatactcctctgctagcataggcaaca |
40896606 |
T |
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| Q |
304 |
aagtgaaataatgacttctaacgcgagacatctgtaaaata |
344 |
Q |
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| T |
40896607 |
aagtgaaacaatgacttctaacgcgagacatctgtaaaata |
40896647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 279
Target Start/End: Original strand, 44146751 - 44147023
Alignment:
| Q |
6 |
ataaaaaataaagaagtcattatggtgttctaaacacgttgnnnnnnntgcttatcatccataatccattagattgtattattaactcggaattgagaag |
105 |
Q |
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| T |
44146751 |
ataagaaataaagaagtcattatggtgttctaaacacgttgaaaaaaatgcttatcatccataatccattagattgtat-attaactcggaattgagaag |
44146849 |
T |
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| Q |
106 |
gaagtggccttcctatattatatcttttgatatccaaacaggtcaataagaattccaagtttatacaaaaaatagagctaaatatcagtttgacttccat |
205 |
Q |
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| T |
44146850 |
gaagtggccttcctatattatatcttttgatatccaaacaggtcaataagaattccaagtttatacaaaaaatagagctaaatatcagtttgacttccat |
44146949 |
T |
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| Q |
206 |
ctgccaatatgagatctgagatcagagatgtgcagtcaaaggtagttcaaaaaatcttagcggcagctaattct |
279 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44146950 |
ctgccaatatgagatctgagatcagagatgcgcagtcaaaggtagttcaaaaaatcttagcggtagctaattct |
44147023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 44151926 - 44151996
Alignment:
| Q |
274 |
aattctactcctctgctagcataggcaacaaagtgaaataatgacttctaacgcgagacatctgtaaaata |
344 |
Q |
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| T |
44151926 |
aattctactcctctgctagcataggcaacaaagtgaaataatgacttctaacgcgagacatctgtaaaata |
44151996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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