View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8758_low_24 (Length: 367)
Name: NF8758_low_24
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 12223707 - 12224033
Alignment:
| Q |
20 |
tagattggtttggaagactgagaaaaatgataagtattctgtttgtaatgtttatagaatatgtatgaatgaaattgttgacaatactcatttgcataaa |
119 |
Q |
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| T |
12223707 |
tagattggtttggaagactgacaaaaatggtaggtattctgtttgtagtgcttacaaaatatgtatgaatgaaattgttgacaatactcatttgcataaa |
12223806 |
T |
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| Q |
120 |
tcagatcgttgggatttaatttggaacatgaaagctccctacaacgtgtaggtgtgtcttgtccaaccgaacatgtaatttttggaaataattaag-gga |
218 |
Q |
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| T |
12223807 |
tcgggtcgttgggatttaatttggaacatgaaagctccctacaacgtgtaggtgtgtcttgtccatctgaatgtgtaatttttggaaataattacgagga |
12223906 |
T |
|
| Q |
219 |
caacattcatgttttataggaatgtctgattgtcgtgcaagtttgacgtgcggtgaatttatgggttaattaagattgacagtgcgcttcatcaagatta |
318 |
Q |
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| T |
12223907 |
caacattcatgttttattggaatgtctgactgtcgtgcaagtttggtgtgcggtaaatttatgggataattaagattgacagtgcgcttcatcaag---a |
12224003 |
T |
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| Q |
319 |
ttataatatggattctgttatttttacttt |
348 |
Q |
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| T |
12224004 |
ttataatatggattatgttatttttacttt |
12224033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 12225898 - 12225981
Alignment:
| Q |
75 |
agaatatgtatgaatgaaattgttgacaatactcatttgcataaatcagatcgttgggatttaatttggaacatgaaagctccc |
158 |
Q |
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| T |
12225898 |
agaatatgtatgaacgaaattgttgacaatactcatttggataaactggatcgttgggatttaatttggaacatcaaagctccc |
12225981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 9171086 - 9170953
Alignment:
| Q |
20 |
tagattggtttggaagactgagaaaaatgataagtattctgtttgtaatgtttatagaatatgtatgaatgaaattgttgacaatactcatttgcataaa |
119 |
Q |
| |
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||||||| |||| ||| || |||||||| || |||||| ||| |||||| ||| | |||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
9171086 |
tagattgatttgaaaggttgggaaaaatggtatgtattccgttcgtaatgcttacataatatgtatgaaagaaattgttgacaatactcacttgcataaa |
9170987 |
T |
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| Q |
120 |
tcagatcgttgggatttaatttggaacatgaaag |
153 |
Q |
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| T |
9170986 |
tcgggttgttgggatttaatttggaacattaaag |
9170953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 38247044 - 38246961
Alignment:
| Q |
75 |
agaatatgtatgaatgaaattgttgacaatactcatttgcataaatcagatcgttgggatttaatttggaacatgaaagctccc |
158 |
Q |
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| T |
38247044 |
agaatatgtatgaatgaaattgttgacaatattcatttgcataaatctggtcgttgggacttaatttggaacattaaatctccc |
38246961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 169 - 348
Target Start/End: Complemental strand, 38246886 - 38246713
Alignment:
| Q |
169 |
aggtgtgtcttgtccaaccgaacatgtaatttttggaaataattaag-ggacaacattcatgttttataggaatgtctgattgtcgtgcaagtttgacgt |
267 |
Q |
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|||||||||||||||||||||| |||||||| | |||||||||| | ||||| |||||||||||||| |||||| ||| || ||||||||||| | | |
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| T |
38246886 |
aggtgtgtcttgtccaaccgaatgtgtaatttgtagaaataattacgaggacatcattcatgttttattggaatgcttgagtgctgtgcaagtttggcat |
38246787 |
T |
|
| Q |
268 |
gcggtgaatttatgggttaattaagattgacagtgcgcttcatcaagattattataatatggattctgttatttttacttt |
348 |
Q |
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| T |
38246786 |
gccgtgaatttatggg----ataagattgatcgtgtgcttcgtcagg---attataatatgaattctgttatttttacttt |
38246713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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