View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8758_low_28 (Length: 324)
Name: NF8758_low_28
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_low_28 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 31 - 308
Target Start/End: Complemental strand, 4387973 - 4387689
Alignment:
| Q |
31 |
ttcaatcaattttaggtagtcaatatctctcagtacatggccttgttgatttatctgtatgtttgttacttgcttatgaattatg-------ctatagaa |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
4387973 |
ttcaatcaattttaggtagtcaatatctctcagtacatgaccttgttgatttatccgtatgtttgttacttgcttatgaattatgaattatgctatggaa |
4387874 |
T |
|
| Q |
124 |
gccaattctctgaacaattatttttatagtctattatcaccaattctctgtatgcttgttgttgttgatttatcttgaataatgacttctgtatgttttc |
223 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4387873 |
gccaattctctgaacaattattttgatagtctattatcaccaattctctgtatgtttgttattgttgatttatgttgaataatgacttctgtatgttttc |
4387774 |
T |
|
| Q |
224 |
ctgtcaatcttttttcatggtgaaagaattggtggaactatcgccttatcacactcacaatcacagatatcaatgtcgtaactgt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4387773 |
ctgtcaatcttttttcatggtgaaagaattggtggaactatcgccttatcacactcacaaacacagatatcaatgtcgtaactgt |
4387689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 163 - 308
Target Start/End: Complemental strand, 4375664 - 4375522
Alignment:
| Q |
163 |
ccaattctctgtatgcttgttgttgttgatttatcttgaataatgacttctgtatgttttcctgtcaatcttttttcatggtgaaagaattggtggaact |
262 |
Q |
| |
|
|||||||||| |||| ||||| |||||||||||||||||||||| || | ||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
4375664 |
ccaattctctttatggttgttattgttgatttatcttgaataattacgtatgtatgttttcctttcaatcttttttcatggtgaaagaattgt---aact |
4375568 |
T |
|
| Q |
263 |
atcgccttatcacactcacaatcacagatatcaatgtcgtaactgt |
308 |
Q |
| |
|
||| || | || |||||||||||||||| ||||||| || ||||| |
|
|
| T |
4375567 |
atcatctcaacaaactcacaatcacagatttcaatgttgtgactgt |
4375522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 44 - 134
Target Start/End: Complemental strand, 4375745 - 4375655
Alignment:
| Q |
44 |
aggtagtcaatatctctcagtacatggccttgttgatttatctgtatgtttgttacttgcttatgaattatgctatagaagccaattctct |
134 |
Q |
| |
|
||||||| || ||| || ||| |||| |||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||||| |
|
|
| T |
4375745 |
aggtagtaaaaatcccttagttcatgaccttgttgatttatctgtatgtttgttacttgctgatgaattcttctatgtaagccaattctct |
4375655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University