View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8758_low_34 (Length: 273)
Name: NF8758_low_34
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 14247501 - 14247257
Alignment:
| Q |
1 |
aaagaatgccttatgcgataagtggaggtttttcctcgagtttcagtgaatattgacagcgctgttgctggtgtgtgccatggaggagttttatgtttg- |
99 |
Q |
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| T |
14247501 |
aaagaatgccttatgcgataagtggaggtttttcctcgagtttcagtgaatattgacagcgctgttgctggtgtgtgtcatggaggagttttatgtgggt |
14247402 |
T |
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| Q |
100 |
--gtgggtgctgtcagctcctactgctggtcttttgactgtt--gcttatgcttccagcgagagtttctgtcattattgcttctgttttcagagctgggg |
195 |
Q |
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| T |
14247401 |
ccgtgggtgctgtcagctcctactgctggtcttttgactgttttgcttatgcttccagcgagagtttctgtcattattgcttctgttttcagagctgggg |
14247302 |
T |
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| Q |
196 |
gcagggtctgcggttagtgccattttggcacggttttggtgtttt |
240 |
Q |
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| T |
14247301 |
gcagggtctgcggttagtgccattttggcacggttttggtgtttt |
14247257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9850401 - 9850169
Alignment:
| Q |
1 |
aaagaatgccttatgcgataagtggaggtttttcctcgagtttcagtgaatattgacagcgctgttgctggtgtgtgccatggaggagttttatgt---t |
97 |
Q |
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| T |
9850401 |
aaagaatgccttatgcgataagtggagttttttcctcgagtttcagtgaatattgatagcgctattgctgttacatgccgtggaggagttttctgtgggt |
9850302 |
T |
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| Q |
98 |
tggtgggtgctgtcagctcctactgctggtct--tttgactgttg-----cttatgcttccagcgagagtttctgtcattattgcttctgttttcagagc |
190 |
Q |
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| T |
9850301 |
tggtgggtgctgtcagctcctactgctgtttttattttaatattgttttacttatgcttctagggagagttgctgccataagtgattctattttcagagc |
9850202 |
T |
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| Q |
191 |
tgggggcagggtctgcggttagtgccattttgg |
223 |
Q |
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| T |
9850201 |
tgggggtggggtctgtggttagcgccattttgg |
9850169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 28 - 238
Target Start/End: Complemental strand, 1330263 - 1330045
Alignment:
| Q |
28 |
gtttttcctcgagtttcagtgaatattgacagcgctgttgctggtgtgtgccatggaggagttttatgt---ttggtgggtgctgtcagctcctactgct |
124 |
Q |
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| T |
1330263 |
gttttttctcgagtttctgtgtatattgacagcgctgttgctggtgtgtgtcgtggaggagatttttgtgggtcggtgggtgctttcagctcctactgct |
1330164 |
T |
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| Q |
125 |
ggtcttttg--actgtt--gcttatgcttccagcgagagtttctgtcatta-ttgcttctgttttcagagctgggggcagggtctgcggttagtgccatt |
219 |
Q |
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| T |
1330163 |
ggtttttttttactgttttgcttatgcttctagggagagttgctgttattagttgcttctgttttcagagctgggggtagggtctgcggttagcgccatg |
1330064 |
T |
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| Q |
220 |
ttggcacggttttggtgtt |
238 |
Q |
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||||||||||||||||||| |
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| T |
1330063 |
ttggcacggttttggtgtt |
1330045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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