View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8758_low_4 (Length: 573)

Name: NF8758_low_4
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8758_low_4
NF8758_low_4
[»] chr2 (12 HSPs)
chr2 (317-569)||(9050115-9050367)
chr2 (14-177)||(9050472-9050635)
chr2 (483-569)||(16576247-16576333)
chr2 (362-512)||(38576815-38576964)
chr2 (216-275)||(9050400-9050460)
chr2 (362-454)||(25606414-25606506)
chr2 (495-566)||(38576930-38577001)
chr2 (484-566)||(13712743-13712825)
chr2 (334-448)||(13712860-13712974)
chr2 (524-569)||(17606618-17606663)
chr2 (488-569)||(35370402-35370483)
chr2 (482-566)||(35371109-35371193)
[»] chr1 (7 HSPs)
chr1 (413-569)||(44330392-44330548)
chr1 (483-565)||(68096-68178)
chr1 (483-552)||(46080970-46081039)
chr1 (335-473)||(38839577-38839715)
chr1 (483-552)||(10775162-10775231)
chr1 (477-557)||(44342034-44342112)
chr1 (366-442)||(49897922-49897998)
[»] chr8 (5 HSPs)
chr8 (371-552)||(32166642-32166819)
chr8 (483-566)||(12736053-12736136)
chr8 (360-455)||(35574743-35574838)
chr8 (401-473)||(12782463-12782535)
chr8 (483-566)||(29969097-29969179)
[»] chr4 (3 HSPs)
chr4 (362-538)||(25062367-25062544)
chr4 (435-557)||(15131577-15131698)
chr4 (328-395)||(11020075-11020141)
[»] chr6 (2 HSPs)
chr6 (334-465)||(32047194-32047325)
chr6 (500-557)||(32047190-32047247)
[»] chr7 (9 HSPs)
chr7 (364-465)||(31171386-31171487)
chr7 (442-566)||(23944034-23944158)
chr7 (364-552)||(31152738-31152926)
chr7 (368-538)||(42012687-42012855)
chr7 (398-539)||(8900670-8900810)
chr7 (326-421)||(23944088-23944183)
chr7 (483-563)||(34891532-34891612)
chr7 (483-565)||(32138880-32138962)
chr7 (334-399)||(31152721-31152786)
[»] chr3 (5 HSPs)
chr3 (432-552)||(39341148-39341267)
chr3 (333-389)||(42091791-42091847)
chr3 (334-443)||(39341219-39341328)
chr3 (482-551)||(54437804-54437873)
chr3 (358-509)||(2562965-2563115)
[»] chr5 (5 HSPs)
chr5 (487-565)||(2243310-2243388)
chr5 (334-456)||(2243250-2243371)
chr5 (335-569)||(40483703-40483935)
chr5 (334-415)||(14138565-14138646)
chr5 (334-382)||(39730313-39730361)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 317 - 569
Target Start/End: Complemental strand, 9050367 - 9050115
Alignment:
Q  317 tttctatagttagttgtcattttcatcttaaaaatatcaagcattttcatctctttcatttaacatttgatttacatcttctttgtttcacaatcgaatc 416  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9050367 tttctatagtcagttgccattttcatcttaaaaatatcaagcattttcatctctttcatttaacatttgatttacatcttctttgtttcataatcgaatc 9050268  T
Q  417 ctactagtcattagaggtaaattaccctcaattaatcaagagataatgttggtctcatcaatataattttttcttacgatcagttaccattttcatacga 516  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  9050267 ctactagtcattagaggtaaattaccctcaattcatcaagagataatgttggtctcgtcaatataattttttcttacgatcagttaccattttcatatga 9050168  T
Q  517 agaacaacaaacttcttcatctccatcattcaacatatgatgtccatctcatt 569  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9050167 agaacaacaaacttcttcatctccatcattcaacatatgatctccatctcatt 9050115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 14 - 177
Target Start/End: Complemental strand, 9050635 - 9050472
Alignment:
Q  14 aaatggttgtttcaaattatataaatagtaacatctttggtnnnnnnnnnctataaataacttaagttaaaacagagtagaaaaatataatgaccctgat 113  Q
    |||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9050635 aaatggttgtttcaaattatataaatagtaacatctttggtaaaaaaaaactataaataacttaagttaaaacagagtagaaaaatataatgaccttgat 9050536  T
Q  114 gtagatacaaaggaataaagtgttgggtaaaatgatttttctaggttgctccttgttgaattgg 177  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  9050535 gtagatacaaaggaataaagcgttggataaaatgatttttctaggttgctccttgttgaattgg 9050472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 483 - 569
Target Start/End: Original strand, 16576247 - 16576333
Alignment:
Q  483 ttttttcttacgatcagttaccattttcatacgaagaacaacaaacttcttcatctccatcattcaacatatgatgtccatctcatt 569  Q
    ||||||||||| |||| ||||||||||| |   ||||||| ||||||||||||||||| ||||||||||| |||| ||| |||||||    
T  16576247 ttttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcatt 16576333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 362 - 512
Target Start/End: Complemental strand, 38576964 - 38576815
Alignment:
Q  362 ttcatctctttcatttaacatttgatttacatcttctttgtttcacaatcgaatcctactagtcattagaggtaaattaccctcaattaatcaagagata 461  Q
    ||||||||||||||| ||||| |||||| |||||  || ||  || |||| |||| || | ||||||||  ||||||||||| ||||| || ||| | ||    
T  38576964 ttcatctctttcattcaacatgtgatttccatctctttcgtaccataatcaaatcatatttgtcattaggagtaaattaccc-caattcataaaggggta 38576866  T
Q  462 atgttggtctcatcaatataattttttcttacgatcagttaccattttcat 512  Q
    |||| || |||||| |||   ||||||||||| ||||||||||||||||||    
T  38576865 atgtaggcctcatcgataaggttttttcttacaatcagttaccattttcat 38576815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 9050460 - 9050400
Alignment:
Q  216 gtaaacgtaggtcactgaaaag-gatagtgcataatatatacaaagtccgatgtttgaacc 275  Q
    |||||||||||||| || |||| |||||||||||||||||||||||| || ||||||||||    
T  9050460 gtaaacgtaggtcagtggaaagagatagtgcataatatatacaaagttcggtgtttgaacc 9050400  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 454
Target Start/End: Original strand, 25606414 - 25606506
Alignment:
Q  362 ttcatctctttcatttaacatttgatttacatcttctttgtttcacaatcgaatcctactagtcattagaggtaaattaccctcaattaatca 454  Q
    ||||||| ||||||| ||||| |||| ||||||| ||| ||| || || ||||||||||| || ||||  |||||||||||||||||| ||||    
T  25606414 ttcatctgtttcattcaacatatgatatacatctccttcgttccataaacgaatcctacttgttattaagggtaaattaccctcaattcatca 25606506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 566
Target Start/End: Complemental strand, 38577001 - 38576930
Alignment:
Q  495 atcagttaccattttcatacgaagaacaacaaacttcttcatctccatcattcaacatatgatgtccatctc 566  Q
    ||||||||||||||||||   |||||||  ||| |||||||||||  ||||||||||| |||| ||||||||    
T  38577001 atcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgatttccatctc 38576930  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 566
Target Start/End: Complemental strand, 13712825 - 13712743
Alignment:
Q  484 tttttcttacgatcagttaccattttcatacgaagaacaacaaacttcttcatctccatcattcaacatatgatgtccatctc 566  Q
    |||||||||| |||||||||||||| |||   ||||||| |||||||||| |||| | | ||||||||| | || ||||||||    
T  13712825 tttttcttactatcagttaccatttccatcttaagaacatcaaacttctttatcttctttattcaacatctaatctccatctc 13712743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 448
Target Start/End: Complemental strand, 13712974 - 13712860
Alignment:
Q  334 cattttcatcttaaaaatatcaagcattttcatctctttcatttaacatttgatttacatcttctttgtttcacaatcgaatcctactagtcattagagg 433  Q
    |||||| ||||||||||| |||| | |||| ||||| |||||||||||| |||| |||||||  || ||| || || | |||  || | |||||||| |     
T  13712974 catttttatcttaaaaatttcaaacttttttatctccttcatttaacatgtgatctacatctctttggttccaaaacctaattgtatttgtcattaggga 13712875  T
Q  434 taaattaccctcaat 448  Q
    |||||||||||||||    
T  13712874 taaattaccctcaat 13712860  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 524 - 569
Target Start/End: Complemental strand, 17606663 - 17606618
Alignment:
Q  524 caaacttcttcatctccatcattcaacatatgatgtccatctcatt 569  Q
    ||||||| ||||||||| ||||||||||| |||| |||||||||||    
T  17606663 caaacttgttcatctccttcattcaacatgtgatatccatctcatt 17606618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 569
Target Start/End: Original strand, 35370402 - 35370483
Alignment:
Q  488 tcttacgatcagttaccattttcatacgaagaacaacaaacttcttcatctccatcattcaacatatgatgtccatctcatt 569  Q
    |||||| ||||||||||||||| ||   ||||| | ||||||||||| ||||| ||||||||||| | ||  ||||||||||    
T  35370402 tcttacaatcagttaccattttaatctcaagaataccaaacttcttcgtctccttcattcaacatgtaatacccatctcatt 35370483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 566
Target Start/End: Original strand, 35371109 - 35371193
Alignment:
Q  482 attttttcttacgatcagttaccattttcatacgaagaacaacaaacttcttcatctccatcattcaacatatgatgtccatctc 566  Q
    ||||||| |||| |||| ||||||||||||||  ||||||| ||||||||||  |  || ||||| ||||| |||| ||||||||    
T  35371109 atttttttttacaatcatttaccattttcatatcaagaacatcaaacttctttgttaccttcatttaacatgtgatttccatctc 35371193  T

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Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 413 - 569
Target Start/End: Original strand, 44330392 - 44330548
Alignment:
Q  413 aatcctactagtcattagaggtaaattaccctcaattaatcaagagataatgttggtctcatcaatataattttttcttacgatcagttaccattttcat 512  Q
    |||||||||| | ||||||  |||||||||  ||||| ||||| ||||||| || | ||||  |||||||||||||||||| | || |||||||||||||    
T  44330392 aatcctactaattattagaaataaattacctccaattcatcaaaagataatctttgcctcacaaatataattttttcttacaaccatttaccattttcat 44330491  T
Q  513 acgaagaacaacaaacttcttcatctccatcattcaacatatgatgtccatctcatt 569  Q
    |  || |||| || |||||||||| ||||| |||| |||| |||| || ||||||||    
T  44330492 atcaaaaacatcacacttcttcatttccattattctacatgtgatctctatctcatt 44330548  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 565
Target Start/End: Original strand, 68096 - 68178
Alignment:
Q  483 ttttttcttacgatcagttaccattttcatacgaagaacaacaaacttcttcatctccatcattcaacatatgatgtccatct 565  Q
    ||||||||||| || |||||||||||| ||   ||||||| | ||||||||||||||| ||||| ||||| |||| |||||||    
T  68096 ttttttcttacaatgagttaccatttttatttcaagaacatctaacttcttcatctccttcatttaacatgtgatctccatct 68178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 552
Target Start/End: Original strand, 46080970 - 46081039
Alignment:
Q  483 ttttttcttacgatcagttaccattttcatacgaagaacaacaaacttcttcatctccatcattcaacat 552  Q
    ||||||||||| |||| |||||||||||||   |||||||  |||||||||||||||| ||| |||||||    
T  46080970 ttttttcttacaatcaattaccattttcatctcaagaacattaaacttcttcatctccttcactcaacat 46081039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 473
Target Start/End: Complemental strand, 38839715 - 38839577
Alignment:
Q  335 attttcatcttaaaaatatcaagcattttcatctctttcatttaacatttgatttacatcttctttgtttcacaatcgaatcctactagtcattagaggt 434  Q
    |||||||||| || || ||||| | | |||||||  ||||||  |||| |||| |  |||||||| ||| |||||||||||||||||  |||||||  ||    
T  38839715 attttcatctcaagaacatcaaacctcttcatcttcttcattcgacatgtgatcttgatcttcttcgttccacaatcgaatcctacttttcattaggagt 38839616  T
Q  435 aaattaccctcaattaatcaagagataatgttggtctca 473  Q
     ||||||| ||| || |||||| | |||||| |||||||    
T  38839615 taattaccgtcagttcatcaaggggtaatgtaggtctca 38839577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 552
Target Start/End: Original strand, 10775162 - 10775231
Alignment:
Q  483 ttttttcttacgatcagttaccattttcatacgaagaacaacaaacttcttcatctccatcattcaacat 552  Q
    ||||||||||  |||| |||||||||||||   ||||||| ||||||||||||||||  || ||||||||    
T  10775162 ttttttcttagaatcaattaccattttcatcttaagaacatcaaacttcttcatctctttcgttcaacat 10775231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 557
Target Start/End: Complemental strand, 44342112 - 44342034
Alignment:
Q  477 atataattttttcttacgatcagttaccattttcatacgaagaacaacaaacttcttcatctccatcattcaacatatgat 557  Q
    ||||| ||||||||||| |||| ||||||||||||||  || |||| |||||||||||||  | ||||||||||| |||||    
T  44342112 atatagttttttcttactatca-ttaccattttcatatcaa-aacatcaaacttcttcattgcaatcattcaacaaatgat 44342034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 49897922 - 49897998
Alignment:
Q  366 tctctttcatttaacatttgatttacatcttctttgtttcacaatcgaatcctactagtcattagaggtaaattacc 442  Q
    |||| |||||| ||||| |||| | ||||| |||||||  | ||||||||| || | ||||||||||||||||||||    
T  49897922 tctccttcattcaacatgtgatctccatctcctttgttctagaatcgaatcataattgtcattagaggtaaattacc 49897998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 371 - 552
Target Start/End: Complemental strand, 32166819 - 32166642
Alignment:
Q  371 ttcatttaacatttgatttacatcttctttgtttcacaatcgaatcctactagtcattagaggtaaattaccctcaattaatcaagagataatgttggtc 470  Q
    |||||||||||| ||||||||||||  || ||| || ||||||||| |||| ||||||||||||||||||| | ||||| |||||   | |||||  | |    
T  32166819 ttcatttaacatgtgatttacatctctttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattcatcaaagaaaaatgtatg-c 32166721  T
Q  471 tcatcaatataattttttcttacgatcagttaccattttcatacgaagaacaacaaacttcttcatctccatcattcaacat 552  Q
    ||||| ||   | |||||||||| |||| ||| |||||||||   ||||||| ||||||||||||||||| | |||||||||    
T  32166720 tcatcgat---agtttttcttactatcaattatcattttcatctcaagaacatcaaacttcttcatctcctttattcaacat 32166642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 566
Target Start/End: Original strand, 12736053 - 12736136
Alignment:
Q  483 ttttttcttacgatcagttaccattttcatacgaagaacaacaaacttcttcatctccatcattcaacatatgatgtccatctc 566  Q
    ||||| ||||| || ||||||||||| |||   || |||| ||||||||||||||||| || |||||||| |||||||||||||    
T  12736053 tttttccttacaattagttaccatttccatcttaataacatcaaacttcttcatctccttcgttcaacatgtgatgtccatctc 12736136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 360 - 455
Target Start/End: Complemental strand, 35574838 - 35574743
Alignment:
Q  360 ttttcatctctttcatttaacatttgatttacatcttctttgtttcacaatcgaatcctactagtcattagaggtaaattaccctcaattaatcaa 455  Q
    ||||||| ||||||||| ||||| ||||||  ||||  || ||| || ||||||||| || | |||||||| |||||||||||||||||| |||||    
T  35574838 ttttcatatctttcattgaacatatgattttaatctctttcgttccaaaatcgaatcatagttgtcattagcggtaaattaccctcaattcatcaa 35574743  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 473
Target Start/End: Original strand, 12782463 - 12782535
Alignment:
Q  401 gtttcacaatcgaatcctactagtcattagaggtaaattaccctcaattaatcaagagataatgttggtctca 473  Q
    |||||| |||||||| ||||| |||||||||||||| ||| |||||||| ||  || | ||||||||||||||    
T  12782463 gtttcagaatcgaattctacttgtcattagaggtaatttatcctcaattcattgaggggtaatgttggtctca 12782535  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 566
Target Start/End: Original strand, 29969097 - 29969179
Alignment:
Q  483 ttttttcttacgatcagttaccattttcatacgaagaacaacaaacttcttcatctccatcattcaacatatgatgtccatctc 566  Q
    ||||||||||| |||||||||||||||  | | ||||||| ||||||||||| || || ||||||||||| |||| | ||||||    
T  29969097 ttttttcttacaatcagttaccattttttttc-aagaacatcaaacttcttcttccccttcattcaacatgtgatattcatctc 29969179  T

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Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 362 - 538
Target Start/End: Original strand, 25062367 - 25062544
Alignment:
Q  362 ttcatctctttcatttaacatttgatttacatcttctttgtttcacaatcgaatcctactagtcattagaggtaaattaccctcaattaatcaagagata 461  Q
    |||||||  |||||| ||||| |||| | ||||| ||||||| || |||| ||||||||| || ||||| |||||||||||||||||| ||||||  |||    
T  25062367 ttcatctgcttcattaaacatgtgatcttcatctcctttgttccataatcaaatcctacttgttattaggggtaaattaccctcaattcatcaaggaata 25062466  T
Q  462 atgttggtctcatcaatat-aattttttcttacgatcagttaccattttcatacgaagaacaacaaacttcttcatct 538  Q
    |||| ||  ||| |||| |   ||||||||||| |||| ||||| |||||||   ||||| | |||||||||||||||    
T  25062467 atgtaggcttcaccaatttggtttttttcttacaatcaattaccgttttcatctcaagaatatcaaacttcttcatct 25062544  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 435 - 557
Target Start/End: Complemental strand, 15131698 - 15131577
Alignment:
Q  435 aaattaccctcaattaatcaagagataatgttggtctcatcaatataattttttcttacgatcagttaccattttcatacgaagaacaacaaacttcttc 534  Q
    |||||||||| |||| |||||||  |||||| || |||||| ||||  ||||||||||| ||||||||||||||| ||   ||||||| |||| ||||||    
T  15131698 aaattacccttaattcatcaagaattaatgtagg-ctcatcgatatggttttttcttactatcagttaccatttttatctcaagaacatcaaatttcttc 15131600  T
Q  535 atctccatcattcaacatatgat 557  Q
    |||||| ||||||| ||| ||||    
T  15131599 atctccttcattcagcatgtgat 15131577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 395
Target Start/End: Complemental strand, 11020141 - 11020075
Alignment:
Q  328 agttgtcattttcatcttaaaaatatcaagcattttcatctctttcatttaacatttgatttacatct 395  Q
    |||| |||||||||||||||||||||||| | |||| ||||| || ||||||||| |||||| |||||    
T  11020141 agttatcattttcatcttaaaaatatcaaacctttt-atctcctttatttaacatgtgatttgcatct 11020075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 334 - 465
Target Start/End: Original strand, 32047194 - 32047325
Alignment:
Q  334 cattttcatcttaaaaatatcaagcattttcatctctttcatttaacatttgatttacatcttctttgtttcacaatcgaatcctactagtcattagagg 433  Q
    ||||||||||| || || ||||| | | |||||||| |||||| ||||| |||| | | |||||||  || || ||| ||||||||||  ||||||||||    
T  32047194 cattttcatctcaagaacatcaaacttcttcatctcattcattcaacatatgatattcgtcttcttcattccataattgaatcctacttatcattagagg 32047293  T
Q  434 taaattaccctcaattaatcaagagataatgt 465  Q
    ||||||| |||||||| |||||| ||||||||    
T  32047294 taaattatcctcaattcatcaagggataatgt 32047325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 500 - 557
Target Start/End: Original strand, 32047190 - 32047247
Alignment:
Q  500 ttaccattttcatacgaagaacaacaaacttcttcatctccatcattcaacatatgat 557  Q
    |||||||||||||   ||||||| ||||||||||||||||  ||||||||||||||||    
T  32047190 ttaccattttcatctcaagaacatcaaacttcttcatctcattcattcaacatatgat 32047247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 465
Target Start/End: Complemental strand, 31171487 - 31171386
Alignment:
Q  364 catctctttcatttaacatttgatttacatcttctttgtttcacaatcgaatcctactagtcattagaggtaaattaccctcaattaatcaagagataat 463  Q
    ||||| ||||||| || || |||||| |||||  || |||||| |||||||||||||| || |||| ||||||||||||| ||||| |||||| ||||||    
T  31171487 catctgtttcattcaaaatgtgatttccatctctttcgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataat 31171388  T
Q  464 gt 465  Q
    ||    
T  31171387 gt 31171386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 442 - 566
Target Start/End: Original strand, 23944034 - 23944158
Alignment:
Q  442 cctcaattaatcaagagataatgttggtctcatcaatataattttttcttacgatcagttaccattttcatacgaagaacaacaaacttcttcatctcca 541  Q
    |||||||| |||||| | |||||| ||||||| || |  | ||||||||||| || |||| ||||||||||   ||||||| ||||||||||| ||||      
T  23944034 cctcaattcatcaaggggtaatgtaggtctcaccatttaagttttttcttacaattagttgccattttcatcttaagaacatcaaacttcttcttctctt 23944133  T
Q  542 tcattcaacatatgatgtccatctc 566  Q
    ||||||||||| |||| ||||||||    
T  23944134 tcattcaacatgtgatttccatctc 23944158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 364 - 552
Target Start/End: Complemental strand, 31152926 - 31152738
Alignment:
Q  364 catctctttcatttaacatttgatttacatcttctttgtttcacaatcgaatcctactagtcattagaggtaaattaccctcaattaatcaagagataat 463  Q
    ||||| ||||||| || || |||| | |||||  || |||||| |||||||||||||| || |||| ||||||||||||| ||||| |||||| ||||||    
T  31152926 catctgtttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataat 31152827  T
Q  464 gttggtctcatcaatataattttttcttacgatcagttaccattttcatacgaagaacaacaaacttcttcatctccatcattcaacat 552  Q
    || |   |||||| | |  ||||||| ||| | || |||||||||||||   || |||| ||| ||||||||| ||  |||||||||||    
T  31152826 gtagacttcatcattttggttttttcatacaaccaattaccattttcatcttaaaaacatcaatcttcttcatttctttcattcaacat 31152738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 368 - 538
Target Start/End: Original strand, 42012687 - 42012855
Alignment:
Q  368 tctttcatttaacatttgatttacatcttctttgtttcacaatcgaatcctactagtcattagaggtaaattaccctcaattaatcaagagataatgttg 467  Q
    |||||||||||| || ||||||||||||| || ||| || ||||||||| ||   ||||| || | |||||||||| ||||||||||||  | |||||      
T  42012687 tctttcatttaagatgtgatttacatctttttcgttccaaaatcgaatcatatatgtcatgagggataaattaccc-caattaatcaaggaaaaatgtaa 42012785  T
Q  468 gtctcatcaatataattttttcttacgatcagttaccattttcatacgaagaacaacaaacttcttcatct 538  Q
    || ||||||||||  ||||||||||  ||||||||||| ||| ||   ||||||| ||||||| |||||||    
T  42012786 gt-tcatcaatatggttttttcttagaatcagttaccacttttatcacaagaacatcaaactttttcatct 42012855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 539
Target Start/End: Complemental strand, 8900810 - 8900670
Alignment:
Q  398 tttgtttcacaatcgaatcctactagtcattagaggtaaattaccctcaattaatcaagagataatgttggtctcatcaatataattttttcttacgatc 497  Q
    ||||||||| |||||||| ||||| || ||||| | |||||||||| ||||| |||||  |||||||| ||  ||| || | |  ||||||||||| ||     
T  8900810 tttgtttcataatcgaattctacttgttattagggataaattaccc-caattcatcaatggataatgtaggcttcaacatttttgttttttcttacaata 8900712  T
Q  498 agttaccattttcatacgaagaacaacaaacttcttcatctc 539  Q
    | |||||||||| ||   ||||||||||||||||||||||||    
T  8900711 aattaccatttttatctcaagaacaacaaacttcttcatctc 8900670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 421
Target Start/End: Original strand, 23944088 - 23944183
Alignment:
Q  326 ttagttgtcattttcatcttaaaaatatcaagcattttcatctctttcatttaacatttgatttacatcttctttgtttcacaatcgaatcctact 421  Q
    ||||||| |||||||||||||| || ||||| | | ||| ||||||||||| ||||| |||||| ||||| |||| || || ||||||||| ||||    
T  23944088 ttagttgccattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgtgatttccatctcctttattccagaatcgaatcatact 23944183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 563
Target Start/End: Original strand, 34891532 - 34891612
Alignment:
Q  483 ttttttcttacgatcagttaccattttcatacgaagaacaacaaacttcttcatctccatcattcaacatatgatgtccat 563  Q
    ||||||||||| || ||||| |||||| ||   ||||||| |||| |||||||||||| ||||||||||| |||| |||||    
T  34891532 ttttttcttactattagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatctccat 34891612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 565
Target Start/End: Complemental strand, 32138962 - 32138880
Alignment:
Q  483 ttttttcttacgatcagttaccattttcatacgaagaacaacaaacttcttcatctccatcattcaacatatgatgtccatct 565  Q
    ||||||||||  |||| |||||||||||||   ||||||| |||| |||||||||||| || |||||||| | || |||||||    
T  32138962 ttttttcttaaaatcaattaccattttcatcttaagaacatcaaaattcttcatctccttcgttcaacatgtaatctccatct 32138880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 399
Target Start/End: Complemental strand, 31152786 - 31152721
Alignment:
Q  334 cattttcatcttaaaaatatcaagcattttcatctctttcatttaacatttgatttacatcttctt 399  Q
    ||||||||||||||||| ||||| | | ||||| ||||||||| ||||| | |||| |||||||||    
T  31152786 cattttcatcttaaaaacatcaatcttcttcatttctttcattcaacatctaattttcatcttctt 31152721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 432 - 552
Target Start/End: Original strand, 39341148 - 39341267
Alignment:
Q  432 ggtaaattaccctcaattaatcaagagataatgttggtctcatcaatataattttttcttacgatcagttaccattttcatacgaagaacaacaaacttc 531  Q
    ||||||||| |||||||||||||||  | ||| |  | |||| | ||||||||||||||||| || |||||||||||||||   ||||| | |||||||     
T  39341148 ggtaaattatcctcaattaatcaaggaaaaatatatg-ctcaccgatataattttttcttactatgagttaccattttcatcttaagaatatcaaacttt 39341246  T
Q  532 ttcatctccatcattcaacat 552  Q
    ||||||||| |||||||||||    
T  39341247 ttcatctccttcattcaacat 39341267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 389
Target Start/End: Complemental strand, 42091847 - 42091791
Alignment:
Q  333 tcattttcatcttaaaaatatcaagcattttcatctctttcatttaacatttgattt 389  Q
    |||||||||||| ||||| ||||| | ||||||||||||||||||||||| ||||||    
T  42091847 tcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgtgattt 42091791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 443
Target Start/End: Original strand, 39341219 - 39341328
Alignment:
Q  334 cattttcatcttaaaaatatcaagcattttcatctctttcatttaacatttgatttacatcttctttgtttcacaatcgaatcctactagtcattagagg 433  Q
    |||||||||||||| |||||||| | |||||||||| |||||| |||||  ||| | ||| | ||| |||  | ||| ||||| || |  ||||||||||    
T  39341219 cattttcatcttaagaatatcaaactttttcatctccttcattcaacatgagatctccatttacttcgttctaaaattgaatcttatttatcattagagg 39341318  T
Q  434 taaattaccc 443  Q
    ||||||||||    
T  39341319 taaattaccc 39341328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 551
Target Start/End: Original strand, 54437804 - 54437873
Alignment:
Q  482 attttttcttacgatcagttaccattttcatacgaagaacaacaaacttcttcatctccatcattcaaca 551  Q
    |||||||||||| ||||||||||||||| ||   || |||| ||||||||||||||| | ||||| ||||    
T  54437804 attttttcttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatcttcctcatttaaca 54437873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 509
Target Start/End: Original strand, 2562965 - 2563115
Alignment:
Q  358 cattttcatctctttcatttaacatttgatttacatcttctttgtttcacaatcgaatcctactagtcattagaggtaaattaccctcaattaatcaaga 457  Q
    ||||||||||||||||||| ||||| |||| |  || |  ||||||||| ||||||||| ||||  ||||| | ||||||||||||   ||| ||||||     
T  2562965 cattttcatctctttcattcaacatgtgatctctatatcatttgtttcagaatcgaatcatacttatcatttg-ggtaaattaccc-atattcatcaagg 2563062  T
Q  458 gataatgttggtctcatcaatata-attttttcttacgatcagttaccatttt 509  Q
    | |||||| ||||||||  ||| | |||||||||||| | |||||| ||||||    
T  2563063 ggtaatgtaggtctcattgatagagattttttcttacaagcagttatcatttt 2563115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 487 - 565
Target Start/End: Complemental strand, 2243388 - 2243310
Alignment:
Q  487 ttcttacgatcagttaccattttcatacgaagaacaacaaacttcttcatctccatcattcaacatatgatgtccatct 565  Q
    ||||||| || |||||||||||||||   ||||||| ||||||||||||| ||| ||||||||||| |||| |||||||    
T  2243388 ttcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatct 2243310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 456
Target Start/End: Complemental strand, 2243371 - 2243250
Alignment:
Q  334 cattttcatcttaaaaatatcaagcattttcatctctttcatttaacatttgatttacatcttctttgtttcacaatcgaatcctactagtcattagagg 433  Q
    ||||||||||| || || ||||| | | ||||| || |||||| ||||| |||| | ||||||||| |||  | ||||||||  |||| |||||||||||    
T  2243371 cattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatcttcttcgttctagaatcgaattttacttgtcattagagg 2243272  T
Q  434 taaattaccctcaattaatcaag 456  Q
    |||||||||| ||||| ||||||    
T  2243271 taaattaccc-caattcatcaag 2243250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 569
Target Start/End: Original strand, 40483703 - 40483935
Alignment:
Q  335 attttcatcttaaaaatatcaagcattttcatctctttcatttaacatttgatttacatcttctttgtttcacaatcgaatcctactagtcattagaggt 434  Q
    |||||||||| ||||| ||||| | | ||||||||  ||||| ||||| |||| | |||||  || ||| || ||||||||| ||||  ||||| | |||    
T  40483703 attttcatct-aaaaacatcaaacttcttcatctcactcattcaacatgtgatcttcatctcattcgttccaaaatcgaatcatacttatcattgggggt 40483801  T
Q  435 aaattaccctcaattaatcaagagataatgttggtctcatcaatataattttttcttacgatcagttaccattttcatacgaagaacaacaaacttcttc 534  Q
    || |||||||||||| ||||||||||||  | || |||||| |||   ||||||| ||| |||| || |||  || |||  ||||||| | |||||||||    
T  40483802 aatttaccctcaattcatcaagagataacataggcctcatcgata-ggttttttcgtacaatcaattcccaaatttatatcaagaacatccaacttcttc 40483900  T
Q  535 atctccatcattcaacatatgatgtccatctcatt 569  Q
    |||| | | | ||||||| |||| |||||||||||    
T  40483901 atcttctttactcaacatgtgatctccatctcatt 40483935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 334 - 415
Target Start/End: Original strand, 14138565 - 14138646
Alignment:
Q  334 cattttcatcttaaaaatatcaagcattttcatctctttcatttaacatttgatttacatcttctttgtttcacaatcgaat 415  Q
    |||||||||||||| |||||||| | || |||||||||||||| ||||| | || | |||||| ||||||| | ||||||||    
T  14138565 cattttcatcttaagaatatcaaactttctcatctctttcattcaacatgtaatcttcatcttttttgtttgaaaatcgaat 14138646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 382
Target Start/End: Complemental strand, 39730361 - 39730313
Alignment:
Q  334 cattttcatcttaaaaatatcaagcattttcatctctttcatttaacat 382  Q
    ||||||||||| || || ||||| | |||||||||||||||||||||||    
T  39730361 cattttcatctcaagaacatcaaactttttcatctctttcatttaacat 39730313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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