View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8758_low_40 (Length: 247)
Name: NF8758_low_40
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_low_40 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 238
Target Start/End: Original strand, 12224271 - 12224507
Alignment:
| Q |
2 |
ctcgttgttcaataagctagaacttagaatgtgtcttagagatgaagaaggaaaatttatgattgcataaactacttggttctccccattttgtgacgtc |
101 |
Q |
| |
|
|||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12224271 |
ctcgttgttcaacaaggtaggacttagaatgtgtcttagagatgaagaaggaaaatttatgattgcataaactacttggttctccccattttgtgacgtc |
12224370 |
T |
|
| Q |
102 |
gatgcaacaagtttatatacgacacttgattgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgttattcttttag |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12224371 |
gatgcaacaagtttatatacgacacttgattgggtgccaaaccttcagttcaataatgtagattttctgttagattctaagaaggttgttattcttttag |
12224470 |
T |
|
| Q |
202 |
gacatatattgatgatgtctttgagtttagttagtat |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12224471 |
gacatatattgatgatgtctttgagtttagttagtat |
12224507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 23316356 - 23316277
Alignment:
| Q |
111 |
agtttatatacgacacttgattgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgt |
190 |
Q |
| |
|
|||||||| ||| |||||||||||||| ||| ||| ||||| ||||||||||||||||||| || |||||||||||||| |
|
|
| T |
23316356 |
agtttataaacggaacttgattgggtggtaaatctttagttccataatgtagattttgtgttcgactctaagaaggttgt |
23316277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 38246311 - 38246201
Alignment:
| Q |
111 |
agtttatatacgacacttgattgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgtt-attcttttaggacatata |
209 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| ||||| |||| || |
|
|
| T |
38246311 |
agtttatgtacgacacttgattgggtggcaaaccttcagtttgataatgtagactttgtgttagattctaagaaggttgttgattcctttagaacatgta |
38246212 |
T |
|
| Q |
210 |
ttgatgatgtc |
220 |
Q |
| |
|
| |||||||| |
|
|
| T |
38246211 |
taaatgatgtc |
38246201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 46210682 - 46210779
Alignment:
| Q |
138 |
gcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgt-tattcttttaggacatatattgatgatgtctttgagtttagtta |
234 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||| |||||||||||||||||||| ||| ||||||||||||||| |||||| | |||||||| |||| |
|
|
| T |
46210682 |
gcaaaccttcatttcgataatgttgattttgttttagattctaagaaggttgtcgattattttaggacatatatagatgataacattgagtttggtta |
46210779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 9170325 - 9170215
Alignment:
| Q |
116 |
atatacgacacttgattgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgttattcttttaggacatatattgatg |
215 |
Q |
| |
|
||||| |||| |||||||||||||||| ||| ||| |||||||||||||| ||||||||| ||||| |||| | |||||||| |||| ||| ||| |
|
|
| T |
9170325 |
atataagacatttgattgggtggcaaagcttg-gtttgataatgtagattttttgttagattataagattgttg--actcttttagaacatgtatagata |
9170229 |
T |
|
| Q |
216 |
atgtctttgagttt |
229 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
9170228 |
atgtcattgagttt |
9170215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University