View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8758_low_44 (Length: 239)
Name: NF8758_low_44
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 8571525 - 8571303
Alignment:
| Q |
1 |
tctcaatgtggagcaaggtactgcattacctacgtgaataagaatcataatgttgttttatctagctttcctcaacattagtactaaacttgtcataaat |
100 |
Q |
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| T |
8571525 |
tctcaatgtggagcaaggtactgcattacctacgtgaataagaatcataatgttgttttatttagctttcctcaacattagtactaaacttgtcataaat |
8571426 |
T |
|
| Q |
101 |
gttacaggaaagacttacaggcttagaatatcaaacgtgggattggaaaattcactcaactttcgcatacagaaccacaagatgaagctggtagaagtgg |
200 |
Q |
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| T |
8571425 |
gttacaggaaagacttacaggcttagaatatcaaacgtgggattggaaaattcactcaactttcgcatacagaaccacaagatgaagctggtagaagtgg |
8571326 |
T |
|
| Q |
201 |
aaggaacacacaccctccaaacc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
8571325 |
aaggaacacacaccctccaaacc |
8571303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 222
Target Start/End: Complemental strand, 53750658 - 53750540
Alignment:
| Q |
104 |
acaggaaagacttacaggcttagaatatcaaacgtgggattggaaaattcactcaactttcgcatacagaaccacaagatgaagctggtagaagtggaag |
203 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||| || |||| || |||||||| || || |||||||| ||||| ||||||||||||||| |
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| T |
53750658 |
acaggaaagacttataggcttaggatatcaaacgtgggattgcaacattcccttaactttcgaattcaaaaccacaaattgaagttggtagaagtggaag |
53750559 |
T |
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| Q |
204 |
gaacacacaccctccaaac |
222 |
Q |
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| T |
53750558 |
gaacacacacacttcaaac |
53750540 |
T |
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