View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8758_low_47 (Length: 236)
Name: NF8758_low_47
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_low_47 |
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| [»] scaffold2034 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 2047989 - 2048076
Alignment:
| Q |
135 |
gcagaaaccagtgaaaaagggttcgtatccattacaccctggtgtgcaaggttttttcatcacttgcgatggcggaagagaacaccaa |
222 |
Q |
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| T |
2047989 |
gcagaaaccagtgaaaaagggttcgtatccattacaccctggtgtgcaaggttttttcatcacttgcgatggcggaagagaacaccaa |
2048076 |
T |
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Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 2047870 - 2047921
Alignment:
| Q |
16 |
gaaagaagagaaaacgctatcttcctcacaacgtatcttctacgtcacttcc |
67 |
Q |
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| T |
2047870 |
gaaagaagagaaaacgctatcttcctcacaacgtatcttctacgtcacttcc |
2047921 |
T |
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Target: scaffold2034 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold2034
Description:
Target: scaffold2034; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 564 - 651
Alignment:
| Q |
135 |
gcagaaaccagtgaaaaagggttcgtatccattacaccctggtgtgcaaggttttttcatcacttgcgatggcggaagagaacaccaa |
222 |
Q |
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| T |
564 |
gcagaaaccagtgaaaaagggttcgtttacattaaaccccggtgtgcaaggttttttcatcacttgcgatggtggaagagaacaccaa |
651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 16290445 - 16290506
Alignment:
| Q |
139 |
aaaccagtgaaaaagggttcgtatccattacaccctggtgtgcaaggttttttcatcacttg |
200 |
Q |
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| T |
16290445 |
aaacaagtgaaaaagggttcgtttccattaaactctggtatgcaagattttttcatcacttg |
16290506 |
T |
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