View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8758_low_5 (Length: 568)

Name: NF8758_low_5
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8758_low_5
NF8758_low_5
[»] chr7 (4 HSPs)
chr7 (361-555)||(6323184-6323375)
chr7 (19-168)||(6323009-6323159)
chr7 (19-226)||(6324091-6324295)
chr7 (178-264)||(28126367-28126453)
[»] chr4 (2 HSPs)
chr4 (178-264)||(52518952-52519038)
chr4 (103-205)||(3274451-3274554)
[»] scaffold0286 (1 HSPs)
scaffold0286 (110-227)||(15198-15316)
[»] chr6 (4 HSPs)
chr6 (110-227)||(2161790-2161908)
chr6 (178-264)||(5377070-5377156)
chr6 (30-114)||(30371938-30372022)
chr6 (21-85)||(30376297-30376361)
[»] chr2 (2 HSPs)
chr2 (106-167)||(20515991-20516053)
chr2 (224-272)||(31155477-31155525)
[»] chr1 (1 HSPs)
chr1 (178-264)||(17449502-17449588)
[»] chr3 (1 HSPs)
chr3 (199-260)||(6789833-6789894)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 6e-88; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 361 - 555
Target Start/End: Original strand, 6323184 - 6323375
Alignment:
Q  361 ttcacaaaattcaattctttttgtggagtgaattcagttcgatcatcactgttttcctcgcttgtgtttgtggcggcgatttgtctcagtgttcctgtga 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6323184 ttcacaaaattcaattctttttgtggagtgaattcagttcgatcatcactgttttcctcgcttgtgtttgtggcggcgatttgtctcagtgttcctgtga 6323283  T
Q  461 tgatacaaacacagtgtcatcttaatttcaaatcatcaatctttgtttttgatcccgaaggaatattcacttggtcttccttcgttgcaacacca 555  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    ||||||||||||||||||||| |||||||||    
T  6323284 tgatgcaaacacagtgtcatcttaatttcaaatcatcaatctttgtttttgatcccaaag---cattcacttggtcttccttcgtcgcaacacca 6323375  T

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Target: chr7; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 6323009 - 6323159
Alignment:
Q  19 atagttagatggttatggttggttaaccattctagttagtatcatagagaactataaataagtcacttcattgcatctcatcttatcttttttcaatcta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6323009 atagttagatggttatggttggttaaccattctagttagtatcatagagaactataaataaatcacttcattgcatctcatcttatcttttttcaatcta 6323108  T
Q  119 tattcattcaatatgaatttctatgagtattctt-ccatgaatacacataa 168  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6323109 tattcattcaatatgaatttctatgagtattcttcccatgaatacacataa 6323159  T

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Target: chr7; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 6324091 - 6324295
Alignment:
Q  19 atagttagatggttatggttggttaaccattctagttagtatcatagagaactataaataagtcacttcattgcatctcatcttatcttttttcaatcta 118  Q
    ||||||| ||| |||||||| ||||| | ||||||||||||| |||||| |||||||||| |||||||||||| ||| ||| ||||||||||||||||||    
T  6324091 atagttaaatgattatggtttgttaatcgttctagttagtattatagaggactataaatatgtcacttcattgtatcccattttatcttttttcaatcta 6324190  T
Q  119 tattcattcaatatgaatttctatgagtattcttc-catgaatacacataagccctccagcttgcttaaatctataatctttctccctttgactccgtga 217  Q
    ||||||||||||||||||||  ||||||||||||| ||| |||||||||| || ||| | |||||    || ||| |||||||||||||||||||| | |    
T  6324191 tattcattcaatatgaattttaatgagtattcttctcataaatacacatatgctctctatcttgc----atatatgatctttctccctttgactccatta 6324286  T
Q  218 ttctcaaca 226  Q
    |||||||||    
T  6324287 ttctcaaca 6324295  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 28126453 - 28126367
Alignment:
Q  178 cttgcttaaatctataatctttctccctttgactccgtgattctcaacatggtatcagagtgatactcgagggaggaagatgaagat 264  Q
    |||||||| |||||| |||||||||||| ||| ||| ||||| ||||||||||||||||| ||||| | ||||||||||||||||||    
T  28126453 cttgcttacatctatgatctttctccctatgattccatgattttcaacatggtatcagagcgataccctagggaggaagatgaagat 28126367  T

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Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 52518952 - 52519038
Alignment:
Q  178 cttgcttaaatctataatctttctccctttgactccgtgattctcaacatggtatcagagtgatactcgagggaggaagatgaagat 264  Q
    |||||||| |||||| |||||||||||| ||| ||| ||||| ||||||||||||||||| ||||| | ||||||||||||||||||    
T  52518952 cttgcttacatctatgatctttctccctatgattccatgattttcaacatggtatcagagcgataccctagggaggaagatgaagat 52519038  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 205
Target Start/End: Complemental strand, 3274554 - 3274451
Alignment:
Q  103 atcttttttcaatctatattcattcaatatgaatttctatgagtattcttc-catgaatacacataagccctccagcttgcttaaatctataatctttct 201  Q
    ||||||| |||||||||||| ||||||||| ||| | || ||||||||||| |||||||||||||| || ||| |  ||||||| || ||| || |||||    
T  3274554 atcttttatcaatctatatttattcaatataaatctatacgagtattcttcacatgaatacacatatgctctctattttgcttacatatatgatgtttct 3274455  T
Q  202 ccct 205  Q
    ||||    
T  3274454 ccct 3274451  T

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Target: scaffold0286 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 15198 - 15316
Alignment:
Q  110 ttcaatctatattcattcaatatgaatttctatgagtattcttc-catgaatacacataagccctccagcttgcttaaatctataatctttctccctttg 208  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| || ||| | |||||||| | |||| |||||  ||||| ||    
T  15198 ttcaatctatactcattcaatatgaatttctacgagtattcttctcataaatacacatatgctctctatcttgcttacaactatgatcttcatccctatg 15297  T
Q  209 actccgtgattctcaacat 227  Q
    | ||| ||||| |||||||    
T  15298 attccatgattttcaacat 15316  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 2161908 - 2161790
Alignment:
Q  110 ttcaatctatattcattcaatatgaatttctatgagtattcttc-catgaatacacataagccctccagcttgcttaaatctataatctttctccctttg 208  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| || ||| | |||||||| | |||| |||||  ||||| ||    
T  2161908 ttcaatctatactcattcaatatgaatttctacgagtattcttctcataaatacacatatgctctctatcttgcttacaactatgatcttcatccctatg 2161809  T
Q  209 actccgtgattctcaacat 227  Q
    | ||| ||||| |||||||    
T  2161808 attccatgattttcaacat 2161790  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 5377070 - 5377156
Alignment:
Q  178 cttgcttaaatctataatctttctccctttgactccgtgattctcaacatggtatcagagtgatactcgagggaggaagatgaagat 264  Q
    |||||||| |||||| |  ||||||||| ||| ||| ||||||| ||||||||||||||| ||||| | ||||||||||||||||||    
T  5377070 cttgcttacatctatgacttttctccctatgattccatgattcttaacatggtatcagagcgataccctagggaggaagatgaagat 5377156  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 30371938 - 30372022
Alignment:
Q  30 gttatggttggttaaccattctagttagtatcatagagaactataaataagtcacttcattgcatctcatcttatcttttttcaa 114  Q
    ||||||||| |||||||| |||||| ||  | ||||||||||||||||||| |||| || || ||||||  ||||||||| ||||    
T  30371938 gttatggttagttaaccactctagtcagggttatagagaactataaataagccactccactgtatctcaatttatcttttatcaa 30372022  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 30376297 - 30376361
Alignment:
Q  21 agttagatggttatggttggttaaccattctagttagtatcatagagaactataaataagtcact 85  Q
    |||||| |||| |||||| |||||||| |||||||||  | ||||||||||||||| ||| ||||    
T  30376297 agttaggtggtgatggttagttaaccactctagttagggttatagagaactataaagaagccact 30376361  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 20516053 - 20515991
Alignment:
Q  106 ttttttcaatctatattcattcaatatgaatttctatgagtattcttc-catgaatacacata 167  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  20516053 tttttgcaatctatattcattcaatatgaatttctatgagtattcttctcatgattacacata 20515991  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 31155525 - 31155477
Alignment:
Q  224 acatggtatcagagtgatactcgagggaggaagatgaagattgtgcttc 272  Q
    |||||||||||||| ||||| ||||||| | ||||||||| ||||||||    
T  31155525 acatggtatcagagcgatacccgagggatgtagatgaagactgtgcttc 31155477  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 17449502 - 17449588
Alignment:
Q  178 cttgcttaaatctataatctttctccctttgactccgtgattctcaacatggtatcagagtgatactcgagggaggaagatgaagat 264  Q
    |||||||| |||||| | |||||||||| ||| ||| ||||||| ||||||||||||||| ||||| | ||| ||||||||||||||    
T  17449502 cttgcttacatctatgacctttctccctatgattccatgattcttaacatggtatcagagcgataccctaggaaggaagatgaagat 17449588  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 6789833 - 6789894
Alignment:
Q  199 tctccctttgactccgtgattctcaacatggtatcagagtgatactcgagggaggaagatga 260  Q
    ||||||| ||| ||| ||||||| ||||||||||||||| ||||| | ||||||||||||||    
T  6789833 tctccctatgattccatgattcttaacatggtatcagagcgataccctagggaggaagatga 6789894  T

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