View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8758_low_51 (Length: 212)
Name: NF8758_low_51
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_low_51 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 31531799 - 31531921
Alignment:
| Q |
24 |
tgtcctcagtatacttgtggtcgagtatcttggttagggatggacaaagttcagtttagacccaaaattgtgtctgaaccaaaccgaactgaactgtttt |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31531799 |
tgtcctcagtatacttgtggtcgagtatcttggttagggatgggcaaagttcaatttagactcaaaattgtgtctgaaccgaaccgaactgaactgtttt |
31531898 |
T |
|
| Q |
124 |
tcggttcgtttgaactgaaccaa |
146 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
31531899 |
tcagttcgtttgaactgaaccaa |
31531921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 31531941 - 31532003
Alignment:
| Q |
135 |
gaactgaaccaacttaatatgaatcacattaccaacatcttcttcaatttactggttctgcat |
197 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| |
|
|
| T |
31531941 |
gaactgaaccaacttaatatgaatcacagtaccaacatcgtcttcaatttaatggttctgcat |
31532003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 2380392 - 2380346
Alignment:
| Q |
61 |
ggatggacaaagttcagtttagacccaaaattgtgtctgaaccaaac |
107 |
Q |
| |
|
|||||| |||||||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
2380392 |
ggatgggcaaagttcagttcagatccaaaattgagtctgaaccaaac |
2380346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University