View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8758_low_6 (Length: 514)
Name: NF8758_low_6
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 19 - 489
Target Start/End: Complemental strand, 43225372 - 43224891
Alignment:
| Q |
19 |
ctaaatgctatccgttactcctcacttcgtttttccgcactttggcaacgataaata----------------tttgactgcgggatttaattgacagca |
102 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||| |
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| T |
43225372 |
ctaagtgctatccgttactcctcgcttcgtttttccgcactttggcaacgataaatacagttaaagctatatatttgactgctggatttaattgatagca |
43225273 |
T |
|
| Q |
103 |
gagaatcaaggtccttcatg-aacgtccaacgaatggttcttattaactggtcaacaagttgatttccatttccattaaaataggacgcatatagcattg |
201 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43225272 |
gagaatcaaggtcctttatggaacgtccaacgaatggttcttattaactggtcaacaagttgatttccatttccattaaaataggacgcatatagcattg |
43225173 |
T |
|
| Q |
202 |
ttgttgccgcactttattctcctccactctcccaaatcctttaccttttctcttaattaaaagctgcatattcattcttatatttatttaattaactcat |
301 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43225172 |
ttgttgccgcactttattctcctccattctcccaaatcctttaccttttctcttaattaaaagctgcatattcattcttatatttat----ttaactcat |
43225077 |
T |
|
| Q |
302 |
gtggtaactcatcttccttacattagtatcttaataaataaattgttacagaaaatcaattgtgtgttgattggttgctgcattgttttgaggtattagg |
401 |
Q |
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|| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43225076 |
gtcgtaactcatcttccttacattagcatctgaataaataaattgttacagaaaatcaattgtgtgttgattggttgctgcattgttttgaggtattagg |
43224977 |
T |
|
| Q |
402 |
cttgttcaaggtatgtatgtttggattttcatggcctttggaattgttccatgctatagtgcagattttttctctcatactgtgctct |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
43224976 |
cttgttcaaggtatgtatgtttggattttcatggcctttggaattgttccatgc--tagtgcagattttttctctcttactgtgctct |
43224891 |
T |
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