View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8758_low_7 (Length: 509)
Name: NF8758_low_7
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 44766139 - 44765647
Alignment:
| Q |
1 |
acacctttttatagaatattgatataaatgcaaacacatatgacgattttcaaatttagttgtaaatagcgtatttttatcaaatcagagattgttatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
44766139 |
acacctttttatagaatattgatataaatgcaaacacatatgacgattttcaaatttagttgtaaatagcgtatttttatcaaatcagagatagttgtgt |
44766040 |
T |
|
| Q |
101 |
tggataaatgagatgctagaagccattcttcaacgataaacaatattaaatacaaaacttttcgctatttataagtttacgcaatttgtttcccttactg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44766039 |
tggataaatgagatgctagaagccattcttcaacgataaacaatattaaatacaaaattatttgctatttataagtttacgcaatttgtttcccttactg |
44765940 |
T |
|
| Q |
201 |
gcgctattttcatgatgcaccattcatttattggatgctggagatgttacttgccaaatgaaatgcagatatcaagtttttattcttttttaaattcata |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44765939 |
gcgctattttcatgatgcaccattcatttattggatgctggagatattacttgccaaatgaaatgcagatatcaagtttttattcttttttaaattcata |
44765840 |
T |
|
| Q |
301 |
atttacatcacaccttgcattatgcagttagaaagacatctgatggcgcagacaatgttgcaactggtgattcctctgaaagatttgcgctccgcgaagc |
400 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44765839 |
atttacatcaaaccttgcattatgcagttagaaagacatctgatggcgcagacaatgttgcaactggtgattcctctgaaagatttgcgctccgcgaagc |
44765740 |
T |
|
| Q |
401 |
tcagaagtttcactttctaggaaagtgagtactaactgtagcaatgtagcattttgtttaagttgccacctattcattaaagggattcatatg |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44765739 |
tcagaagtttcactttctaggaaagtgagtactaactgtagcaatgtagcattttgtttaagttgccacctattcattaaagggattcatatg |
44765647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University