View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8758_low_9 (Length: 485)
Name: NF8758_low_9
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 5848519 - 5848290
Alignment:
| Q |
18 |
gatgtccgagtccaacttgcgtggatcttatcatgagagtgtcgcttgtgtacatgtatgattccagttagggtcgtgatctcataggtttgcttcattt |
117 |
Q |
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| T |
5848519 |
gatgtccgagtccaacttgcgtggatcctat---gagagtgtcgcttgtgtacatgtatgattccggttagggtcgtgatctcataggtttgcttcattt |
5848423 |
T |
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| Q |
118 |
attagagatgtcttgcacaatccatcaacaaacatatacgtgtgagagttgactaccttaattagtctagagtatgcatcttatgttatgctattgtttt |
217 |
Q |
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| T |
5848422 |
attattgatgtcttgcacaatccatcaacaaacatacacgtgtgagagttgactaccttaattagtctagagtatgcatgttatgttatgctattgtttt |
5848323 |
T |
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| Q |
218 |
actgcaacaatcatttcatcctttgtgtataac |
250 |
Q |
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| T |
5848322 |
actgcaacaatcatttcatcctttgtgtataac |
5848290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 255 - 353
Target Start/End: Complemental strand, 5847729 - 5847635
Alignment:
| Q |
255 |
aagtcatgtcgactgaattttaaactcataaataaatcaatggcttataatagacgaacaattatcatatgaacatgaagatataaacacattttcttt |
353 |
Q |
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| T |
5847729 |
aagtcatgtcgactgaatttcaaactcataaat----caatggcttataatagacgaacaattatcatatgaacatgaagatataaacacattttcttt |
5847635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 428 - 477
Target Start/End: Complemental strand, 5847560 - 5847511
Alignment:
| Q |
428 |
atgtgtttgtgtccaaatatttgtatacattgagccgtactgtctctgct |
477 |
Q |
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| T |
5847560 |
atgtgtttgtgtctaaatatttgtatacattatgccgtactgtctctgct |
5847511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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