View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8759_high_5 (Length: 298)
Name: NF8759_high_5
Description: NF8759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8759_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 43875159 - 43875441
Alignment:
| Q |
1 |
agtggtggatgcggtggtgtgaagggaagaagaggaagccgagacggcagcgaagaagtgtcgccggcagcgttaatgttagctgctttgaagaaatcaa |
100 |
Q |
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| T |
43875159 |
agtggtggatgcggtggtgtgaagggaagaagaggaagccgagacggcagcgaagaagtgtcgccggcagcgttaatgttagctgctttgaagaaatcaa |
43875258 |
T |
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| Q |
101 |
tggtggcctgtagtgtggagagtcctgatgatgtaatctccgccgttcatcatccaatggagattggatggcctacaaatgttaagcatgttaaccatgt |
200 |
Q |
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| T |
43875259 |
tggtggcctgtagtgtggagagtcctgatgatgtaatctccgccgttcatcatccaatggagattggatggcctacaaatgttaagcatgttaaccatgt |
43875358 |
T |
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| Q |
201 |
cacgtttgatcgtttcaatgggtttttgggtcttcctcttgagcttgaggttcatgttcctgctcctgttcctagtgctaggt |
283 |
Q |
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| T |
43875359 |
cacgtttgatcgtttcaatgggtttttgggtcttcctcttgagcttgaggttcatgttcctgctcctgttcctagtgctaggt |
43875441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 283
Target Start/End: Complemental strand, 39992633 - 39992500
Alignment:
| Q |
150 |
tcatccaatggagattggatggcctacaaatgttaagcatgttaaccatgtcacgtttgatcgtttcaatgggtttttgggtcttcctcttgagcttgag |
249 |
Q |
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| T |
39992633 |
tcatcaaatggagatcggatggccaactgatgttcagcatattactcatgttacctttgaccgtttcaatggctttcttggtcttcctgttgagtttgaa |
39992534 |
T |
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| Q |
250 |
gttcatgttcctgctcctgttcctagtgctaggt |
283 |
Q |
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| T |
39992533 |
gttgagatccctggtcgtgttcctagtgctaggt |
39992500 |
T |
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