View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8759_low_1 (Length: 461)

Name: NF8759_low_1
Description: NF8759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8759_low_1
NF8759_low_1
[»] chr4 (2 HSPs)
chr4 (158-448)||(18743711-18744004)
chr4 (18-161)||(18744229-18744372)
[»] chr5 (3 HSPs)
chr5 (329-395)||(38294884-38294950)
chr5 (348-395)||(38301617-38301664)
chr5 (343-389)||(38306043-38306089)
[»] scaffold0168 (1 HSPs)
scaffold0168 (251-325)||(20996-21071)
[»] chr8 (4 HSPs)
chr8 (212-304)||(25172689-25172782)
chr8 (212-279)||(11944665-11944733)
chr8 (189-296)||(22651959-22652067)
chr8 (251-296)||(12936522-12936567)
[»] chr3 (2 HSPs)
chr3 (192-271)||(11665952-11666032)
chr3 (218-293)||(28678289-28678365)
[»] chr6 (1 HSPs)
chr6 (251-313)||(32839677-32839739)
[»] chr2 (3 HSPs)
chr2 (251-293)||(32199171-32199213)
chr2 (253-313)||(16069287-16069347)
chr2 (189-241)||(36096343-36096395)
[»] chr1 (1 HSPs)
chr1 (251-319)||(15641061-15641130)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 158 - 448
Target Start/End: Complemental strand, 18744004 - 18743711
Alignment:
Q  158 tacggacactccttatatgaaacatgtctcagtgtcagacacatgtcatatccaacatcgacacgac---accggcacatataattatataagtactgtg 254  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||   ||||||||||||||||||||||||||||||    
T  18744004 tacggacactcctcatatgaaacatgtcacagtgtcagacacatgtcatatccaacatcgatacgacgacaccggcacatataattatataagtactgtg 18743905  T
Q  255 attttatcaaattattaacaatgtcagcatgtcagtgtccgtctcatatcagtgtccgtgttcgtatctgtctcaaattgttgctttcttgtgtttacct 354  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||    
T  18743904 attttatcaaattattaacaatgtcggcatgtcagtgtccgtctcatatcggtgtccgtgttcgtatgtgtctcaaattgttgccttcttgtgtttacct 18743805  T
Q  355 caattgtaataccactcaaaaccacgttaggtggagatgaagtgaatattgcttttgattgggtatcatcaccataaattgttgtggttcttct 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  18743804 caattgtaataccactcaaaaccacgttaggtggagatgaagtgaatattgcttttgattgaatatcatcatcataaattgttgtggttcttct 18743711  T

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Target: chr4; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 18744372 - 18744229
Alignment:
Q  18 ataacctaagaaactacaatcaaagatagctgaattattaccgaatatagtagcagctactgcctttccattacttccatgtgtgttctgcaattacgca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18744372 ataacctaagaaactacaatcaaagatagctgaattattaccgaatatagtagcagctactgcctttccattacttccatgtgtgttctgcaattacgca 18744273  T
Q  118 acaattaattatatataagcaagttattaaaatcattgcatacg 161  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  18744272 acaattaattatatataagcaagttattaaaatcatttcatacg 18744229  T

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Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 329 - 395
Target Start/End: Original strand, 38294884 - 38294950
Alignment:
Q  329 aaattgttgctttcttgtgtttacctcaattgtaataccactcaaaaccacgttaggtggagatgaa 395  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||| |||||    
T  38294884 aaattgttgctttcttgtgtttacctcaaatgtaataccactcaaaatcacattaggtggaaatgaa 38294950  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 395
Target Start/End: Original strand, 38301617 - 38301664
Alignment:
Q  348 tttacctcaattgtaataccactcaaaaccacgttaggtggagatgaa 395  Q
    |||||||||| ||||||||||||||||| ||| ||||||||| |||||    
T  38301617 tttacctcaaatgtaataccactcaaaatcacattaggtggaaatgaa 38301664  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 389
Target Start/End: Original strand, 38306043 - 38306089
Alignment:
Q  343 ttgtgtttacctcaattgtaataccactcaaaaccacgttaggtgga 389  Q
    |||| |||||||||| ||||||||||||||||| ||| |||||||||    
T  38306043 ttgtatttacctcaaatgtaataccactcaaaatcacattaggtgga 38306089  T

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Target: scaffold0168 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 325
Target Start/End: Complemental strand, 21071 - 20996
Alignment:
Q  251 tgtgattttatcaaattattaacaatgtcagcatgtcagtgtccgtctcatatc-agtgtccgtgttcgtatctgt 325  Q
    ||||||||| |||||||||||||  ||||||||||||||||||||| || | ||  ||||||||||||||||||||    
T  21071 tgtgattttctcaaattattaaccgtgtcagcatgtcagtgtccgtgtcgtgtctggtgtccgtgttcgtatctgt 20996  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 304
Target Start/End: Original strand, 25172689 - 25172782
Alignment:
Q  212 acatcgacacgacaccggcacatataattatat--aagtactgtgattttatcaaattattaacaatgtcagcatgtcagtgtccgtctcatatc 304  Q
    |||| |||||||||||| |||||||||||| ||  || || ||| ||||||||||||||||| || ||||||||| ||||| ||||| |||||||    
T  25172689 acattgacacgacaccgacacatataattacattaaaata-tgtaattttatcaaattattagcagtgtcagcatatcagtatccgtgtcatatc 25172782  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 11944733 - 11944665
Alignment:
Q  212 acatcgacacgacaccggcacatataattata-taagtactgtgattttatcaaattattaacaatgtc 279  Q
    ||||| ||||||||||| |||||||||||| | | |||  |||||||||||||||||||||||| ||||    
T  11944733 acatcaacacgacaccgacacatataattacactgagttatgtgattttatcaaattattaacagtgtc 11944665  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 296
Target Start/End: Complemental strand, 22652067 - 22651959
Alignment:
Q  189 gtgtcagacacatgtcatatccaacatcgacacgacaccggcacatataattatat--aagtactgtgattttatcaaattattaacaatgtcagcatgt 286  Q
    ||||| |||||||||| | ||| ||| ||||||||||||| ||| | |||||||||  || || ||||||||| ||||||||||| |  |||| || |||    
T  22652067 gtgtcggacacatgtcgtgtccgacaccgacacgacaccgacacttgtaattatattgaatta-tgtgattttttcaaattattagctgtgtcggcgtgt 22651969  T
Q  287 cagtgtccgt 296  Q
    ||||||||||    
T  22651968 cagtgtccgt 22651959  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 12936522 - 12936567
Alignment:
Q  251 tgtgattttatcaaattattaacaatgtcagcatgtcagtgtccgt 296  Q
    |||||||||||||||||||||||||||||  | ||||||| |||||    
T  12936522 tgtgattttatcaaattattaacaatgtcgacgtgtcagtatccgt 12936567  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 11666032 - 11665952
Alignment:
Q  192 tcagacacatgtcatatccaacatcgacacgacaccggcacatataattata-taagtactgtgattttatcaaattatta 271  Q
    |||||||| |||| | || |||||| ||||||||||| |||||||||||| | ||| |  |||||||||||||||||||||    
T  11666032 tcagacacgtgtcgtgtctaacatcaacacgacaccgacacatataattacactaaattgtgtgattttatcaaattatta 11665952  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 293
Target Start/End: Complemental strand, 28678365 - 28678289
Alignment:
Q  218 acacgacaccggcacatataattata-taagtactgtgattttatcaaattattaacaatgtcagcatgtcagtgtc 293  Q
    ||||||||||| |||||| ||||||| ||| |  ||||||||||| ||||||||| ||  ||| |||||||||||||    
T  28678365 acacgacaccgacacatacaattatactaaattatgtgattttattaaattattagcagcgtcggcatgtcagtgtc 28678289  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 313
Target Start/End: Original strand, 32839677 - 32839739
Alignment:
Q  251 tgtgattttatcaaattattaacaatgtcagcatgtcagtgtccgtctcatatcagtgtccgt 313  Q
    ||||||||| |||||||||||||| ||||||||||||  |||| || || ||||||| |||||    
T  32839677 tgtgattttctcaaattattaacagtgtcagcatgtcgatgtctgtgtcgtatcagtatccgt 32839739  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 293
Target Start/End: Original strand, 32199171 - 32199213
Alignment:
Q  251 tgtgattttatcaaattattaacaatgtcagcatgtcagtgtc 293  Q
    |||||||||||||||||||||||  || |||||||||||||||    
T  32199171 tgtgattttatcaaattattaactgtgacagcatgtcagtgtc 32199213  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 313
Target Start/End: Original strand, 16069287 - 16069347
Alignment:
Q  253 tgattttatcaaattattaacaatgtcagcatgtcagtgtccgtctcatatcagtgtccgt 313  Q
    ||||||| | |||||||||||  |||| || ||||||||||||| ||||||| ||||||||    
T  16069287 tgatttttttaaattattaacggtgtcggcgtgtcagtgtccgtgtcatatctgtgtccgt 16069347  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 36096343 - 36096395
Alignment:
Q  189 gtgtcagacacatgtcatatccaacatcgacacgacaccggcacatataatta 241  Q
    ||||||||||| |||| | ||| ||||||||||||||||| || |||||||||    
T  36096343 gtgtcagacacgtgtcgtgtccgacatcgacacgacaccgacaaatataatta 36096395  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 15641061 - 15641130
Alignment:
Q  251 tgtgattttatcaaattattaacaatgtcagcatgtcagtgtccgtctcatatcag-tgtccgtgttcgt 319  Q
    ||||||||| | ||||||||| || |||| |||||||||||||||| |||| || | |||||||||||||    
T  15641061 tgtgattttcttaaattattagcagtgtcggcatgtcagtgtccgtgtcatgtccgatgtccgtgttcgt 15641130  T

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