View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8759_low_2 (Length: 425)
Name: NF8759_low_2
Description: NF8759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8759_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 26 - 416
Target Start/End: Original strand, 42894240 - 42894631
Alignment:
| Q |
26 |
aacaacaatttgaaattgtttgtgtgattaaaatgtcatgggttagtttctggaatcaacatattgttaaatacaatgtaagcatgcctataatagatct |
125 |
Q |
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| T |
42894240 |
aacaacaatttgaaattgtttgtgtgattagaatgtcatgggttagtttctggaatcaacatattgttaaatacaatgtaagcatgcctataatagatct |
42894339 |
T |
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| Q |
126 |
accatgccgtgatatttaatcctaccaatatcaattttcagcttttgtatgtgcaatttatttacccaacatgtgcaacactgactaacctata-ttttt |
224 |
Q |
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| T |
42894340 |
accatgccgtgatatttaatcctaccaatatcaattttcagcttttgtatgtgcaatttatttacccaacatgtgcaacactgactaacctatatttttt |
42894439 |
T |
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| Q |
225 |
tctccaaaagaggttttatgacattgtcatagatcaaactagcatgacctcaaactgtcagatgtcattctatacaggccacccatccagtgcaaaaaat |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
42894440 |
tctccaaaagaggttttatgacattgtcatagatcaaactagcatgacctcaaactgtcagatgtcattctatataggccgcccatccagtgcaaaaaat |
42894539 |
T |
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| Q |
325 |
aaaagcactacatgaatagattttaaaaccggtcactgaaaaataatgagatggacttacctctgctttgtttttatccttgctagtctctg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42894540 |
aaaagcactacatgaatagattttaaaaccggtcactgaaaaataatgagatggacttacctctgctttgtttttatccttgctagtctctg |
42894631 |
T |
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