View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8759_low_3 (Length: 402)
Name: NF8759_low_3
Description: NF8759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8759_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 10 - 343
Target Start/End: Original strand, 36899107 - 36899440
Alignment:
| Q |
10 |
attattctaaattttcttacatccaaatccctttctttcacagctttctagcaagtactagtagagaaaacatggctctgggaagaggcagtatggtggt |
109 |
Q |
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| T |
36899107 |
attattccaaattttcttacatccaaatccctttctttcacagctttctagcaagtactagtagagaaaacatggctctgggaagaggcagtgtggtggt |
36899206 |
T |
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| Q |
110 |
tctactagtctgcttttttgttcttaactctgagcttgttcatgctgctacctacaatgttggaggtactgtaggttggacctttaacacggttgggtgg |
209 |
Q |
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| T |
36899207 |
tctactagtctgcttttttgttcttaactctgagcttgttcatgctgctacctacaatgttggaggtactgtaggttggacctttaacacggttgggtgg |
36899306 |
T |
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| Q |
210 |
tctcgaggaaaacgatttagggctggtgacacacttggtatgtatcttccaatcactagagaattattaaattttactctaatacaatcgtgaccataaa |
309 |
Q |
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| T |
36899307 |
tctcgaggaaaacgatttagggctggtgacacacttggtatgtatcttccaatcactagagaattattaaattttactctaatacaatcgtgaccataaa |
36899406 |
T |
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| Q |
310 |
tctataataattatttgtcaaactttacttacat |
343 |
Q |
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| T |
36899407 |
tctataataattatttgtcaaactttacttacat |
36899440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 39 - 256
Target Start/End: Complemental strand, 37009121 - 37008905
Alignment:
| Q |
39 |
cctttctttcacagctttctagcaagtactagtagagaaaacatggctctgggaagaggcagtatggtggttctactagtctgcttttttgttcttaact |
138 |
Q |
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| T |
37009121 |
cctttctttcacagttttctagcaaataatagtagagaaa-catggctctgggaagaggcagtgcattggttctactagtctgcttttttgttcttaact |
37009023 |
T |
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| Q |
139 |
ctgagcttgttcatgctgctacctacaatgttggaggtactgtaggttggacctttaacacggttgggtggtctcgaggaaaacgatttagggctggtga |
238 |
Q |
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| T |
37009022 |
ctgagttggctcatgctgctacctacactgttggaggtcctggaggttggacctttaacactgttggatggcctaatggaaaacgctttagggctggtga |
37008923 |
T |
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| Q |
239 |
cacacttggtatgtatct |
256 |
Q |
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| T |
37008922 |
tacccttggtatgtatct |
37008905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 376
Target Start/End: Original strand, 36899513 - 36899547
Alignment:
| Q |
342 |
atgctattttgtccttatactattcgacatgaggg |
376 |
Q |
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| T |
36899513 |
atgctattttgtcctaatactattcgacatgaggg |
36899547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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