View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8759_low_5 (Length: 342)
Name: NF8759_low_5
Description: NF8759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8759_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 8571642 - 8571958
Alignment:
| Q |
18 |
ctgaaaatgaaaatcatggtctgaaaatgatgatgaagatagtaaatgattagttaccgtgtggttggacttgtaccaatctccaatgaggacagtgtaa |
117 |
Q |
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| T |
8571642 |
ctgaaaatgaaaatcatggtctgaaaatgatgatgaagatagtaaatgattagttaccgtgtggttggacttgtaccaatctccaatgaggacagtgtaa |
8571741 |
T |
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| Q |
118 |
tcaccagcgggatcatcgaagggaacgggaattcttggcctacttagaattctaattcctccaaaaccaccagcagctttgtggaatgcaagagatggga |
217 |
Q |
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| T |
8571742 |
tcaccagcgggatcatcgaagggaacgggaattcttggcctacttagaattctaattcctccaaaaccaccagcagctttgtggaatgcaagagatggga |
8571841 |
T |
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| Q |
218 |
aataatagaaactaccaatttgatctttcacttgaagtatgtatgtgaagttctttccaggtggaatgggacatgttgttccaaacactccatcttcgta |
317 |
Q |
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| T |
8571842 |
aataatagaaactaccaatttgatcttttacttgaagtatgtatgtgaagttctttccaggtggaatgggacatgttgttccaaacactccatcttcgta |
8571941 |
T |
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| Q |
318 |
tgagttccttctctgct |
334 |
Q |
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| T |
8571942 |
tgagttccttctctgct |
8571958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 72 - 334
Target Start/End: Original strand, 53754308 - 53754570
Alignment:
| Q |
72 |
taccgtgtggttggacttgtaccaatctccaatgaggacagtgtaatcaccagcgggatcatcgaagggaacgggaattcttggcctacttagaattcta |
171 |
Q |
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| T |
53754308 |
taccgtatggttggacttgtaccaatcaccaataaggacagtgtaatctccagctggttcagggaaagggactggaattctaggtctactgagtatccta |
53754407 |
T |
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| Q |
172 |
attcctccaaaaccaccagcagctttgtggaatgcaagagatgggaaataatagaaactaccaatttgatctttcacttgaagtatgtatgtgaagttct |
271 |
Q |
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|| ||||||||||||||||| ||||| || ||||| |||||||| || || || || || ||||||||||| ||||||||||| || |||||||||||| |
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| T |
53754408 |
atgcctccaaaaccaccagctgctttttgaaatgctagagatggaaagtagtaaaagcttccaatttgatccttcacttgaagaatatatgtgaagttcc |
53754507 |
T |
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| Q |
272 |
ttccaggtggaatgggacatgttgttccaaacactccatcttcgtatgagttccttctctgct |
334 |
Q |
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| T |
53754508 |
tccctggtgggatggggcatgttgttcccgaaacaccatcttcgaatgagttccttctctgct |
53754570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 177 - 313
Target Start/End: Original strand, 28940785 - 28940921
Alignment:
| Q |
177 |
tccaaaaccaccagcagctttgtggaatgcaagagatgggaaataatagaaactaccaatttgatctttcacttgaagtatgtatgtgaagttctttcca |
276 |
Q |
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||||||||||||||| || ||||| || ||||||||||| ||||| |||| || |||||||||||||| ||||||||| |||||||||||||||| ||| |
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| T |
28940785 |
tccaaaaccaccagctgccttgtgaaaagcaagagatggaaaatagaagaagcttccaatttgatctttgacttgaagtgtgtatgtgaagttcttccca |
28940884 |
T |
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| Q |
277 |
ggtggaatgggacatgttgttccaaacactccatctt |
313 |
Q |
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|| || |||||||||||||| ||| | |||||||||| |
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| T |
28940885 |
ggagggatgggacatgttgtaccataaactccatctt |
28940921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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