View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8759_low_8 (Length: 294)
Name: NF8759_low_8
Description: NF8759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8759_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 38623293 - 38623551
Alignment:
| Q |
17 |
acatcaacaagaagaatgaaatgagttatacttatatgatagaagatgacctgaagagtgagcagtagaggaagctgatcctaacaatgttcgtttgatt |
116 |
Q |
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| T |
38623293 |
acataaacaagaagaatgaaatgagttatacttatatgatagaagatgacctgaagagtgagcagtagaggaagctgatcctaacaatgttcgtttgatt |
38623392 |
T |
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| Q |
117 |
ctcaagtgctgcaccataatcttcagttgtgtagtacagtactactatgatgtaataatactctgttcctagtcccttgtagaagaactaaagttttatc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38623393 |
ctcaagtgctgcaccataatcttcagttgtgtagtacagtactactatgatgtaataataccctgttcctagtcccttgtagaagaactaaagttttatc |
38623492 |
T |
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| Q |
217 |
gtgttttcagtgccgtatgtatccaaacgcgaaacaaaacagacctagtgttctattatc |
276 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38623493 |
gtg-tttcagtgccgtatgtatccaaacgcgaaacaaaacagacctggtgttctattatc |
38623551 |
T |
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