View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8760_high_14 (Length: 215)
Name: NF8760_high_14
Description: NF8760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8760_high_14 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: scaffold0054 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 52316 - 52125
Alignment:
| Q |
15 |
tcacacttcactgtaatcaatccattttgtttcgcttgtttcctggtattattgattaagcattttgcatagaaaagtgatgttaaggaatcacgaaacc |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52316 |
tcactcttcactgtaatcaatccattttgtttcgcttgtttcctggtattattgattaagcattttgcatagaaaagtgatgttaaggaatcacgaaacc |
52217 |
T |
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| Q |
115 |
agtatggttcttcacatttccagagggtgtgttgatcaagtggcccttattcgagatattttctcatttttcagtttctgttctctgcttct |
206 |
Q |
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| T |
52216 |
agtatggttcttcacatttccagagggtgtgttgatcaagtggcccctattcgagatattttctcatttttcagtttctgttcactgtttct |
52125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 2e-66; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 29345982 - 29345796
Alignment:
| Q |
15 |
tcacacttcactgtaatcaatccattttgtttcgcttgtttcctggtattattgattaagcattttgcatagaaaagtgatgttaaggaatcacgaaacc |
114 |
Q |
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|||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| |
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| T |
29345982 |
tcactcttcactgtaatcgatccattttgtttcgcttgaatcctggtattattgattaaacattttgcatagaaaagtga-----aggaatcaggaaacc |
29345888 |
T |
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| Q |
115 |
agtatggttcttcacatttccagagggtgtgttgatcaagtggcccttattcgagatattttctcatttttcagtttctgttctctgcttct |
206 |
Q |
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| T |
29345887 |
agtatggttcttcacaattccagagggtgtgttgatcaagtggcacctattcgagatattttctcatttttcagtttctgttcactgtttct |
29345796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 29888542 - 29888717
Alignment:
| Q |
18 |
cacttcactgtaatcaatccattttgtttcgcttgtttcctggtattattgattaagcattttgcatagaaaagtgatgttaaggaatcacgaaaccagt |
117 |
Q |
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| T |
29888542 |
cacttcagtgtaacctatccattttgtttcgcttgactcctggtattattgattatgcattttgcatagaa---tca-gtaaaggaatcgagaaaccagt |
29888637 |
T |
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| Q |
118 |
atggttcttcacatttccagagggtgtgttgatcaagtggcccttattcgagatattttctcatttttcagtttctgttc |
197 |
Q |
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| T |
29888638 |
atggttcttcacatttccagagggtgtgttgatcaagtggcgcctattcgagatattttctcatttttcagtttttgttc |
29888717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 24270689 - 24270505
Alignment:
| Q |
18 |
cacttcactgtaatcaatccattttgtttcgcttgtttcctggtattattgattaagcattttgcatagaaaagtgatgttaaggaatcacgaaaccagt |
117 |
Q |
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||||||| ||||| | |||||||||| |||||||| |||||||||||||||||||||||||||||||||| | | | |||||||| ||||||||| |
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| T |
24270689 |
cacttcagtgtaacctatccattttgattcgcttgactcctggtattattgattaagcattttgcatagaa---tca-gcgaaggaatcgagaaaccagt |
24270594 |
T |
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| Q |
118 |
atggttcttcacatttccagagggtgtgttgatcaagtggcccttattcgagatattttctcatttttcagtttctgttctctgcttct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||||||||| ||| |||| |
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| T |
24270593 |
atggttcttcacatttccagagggtgtgttgatcaaatggtacctattcgagatattttctcattattcagtttctgttcactgtttct |
24270505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 34 - 174
Target Start/End: Complemental strand, 24257703 - 24257567
Alignment:
| Q |
34 |
atccattttgtttcgcttgtttcctggtattattgattaagcattttg-catagaaaagtgatgttaaggaatcacgaaaccagtatggttcttcacatt |
132 |
Q |
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| T |
24257703 |
atccattttctttcgcttgaatcctggtattattgataaaagattttttcatagaaaagtga-----agcaatcaagaaaccaatatggctcttcacatt |
24257609 |
T |
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| Q |
133 |
tccagagggtgtgttgatcaagtggcccttattcgagatatt |
174 |
Q |
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| T |
24257608 |
tccagagggtgtgttgatcaagtggcacctattcgagatatt |
24257567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 29086589 - 29086666
Alignment:
| Q |
128 |
acatttccagagggtgtgttgatcaagtggcccttattcgagatattttctcatttttcagtttctgttctctgcttct |
206 |
Q |
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| T |
29086589 |
acatttccagagggtgtgttgatcaagtggcacctattcgagata-tttctcatttttcggtctctgttctctgtttct |
29086666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 29931780 - 29931832
Alignment:
| Q |
18 |
cacttcactgtaatcaatccattttgtttcgcttgtttcctggtattattgat |
70 |
Q |
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|||||||||||| || ||||||||||||| ||||| |||||||||||||||| |
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| T |
29931780 |
cacttcactgtagtctatccattttgtttagcttgaatcctggtattattgat |
29931832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 29086512 - 29086564
Alignment:
| Q |
18 |
cacttcactgtaatcaatccattttgtttcgcttgtttcctggtattattgat |
70 |
Q |
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||||||| |||| || |||||||||||||| |||| |||||||||||||||| |
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| T |
29086512 |
cacttcattgtagtctatccattttgtttcacttgaatcctggtattattgat |
29086564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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