View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8760_high_5 (Length: 435)
Name: NF8760_high_5
Description: NF8760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8760_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 34392627 - 34393042
Alignment:
| Q |
1 |
tgttttgaaaaattaaatttagttacaaggatatatattagttatttggttatgtttaaaatatgtcttggctgtaactctagaaaaattcatattttaa |
100 |
Q |
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| T |
34392627 |
tgttttgaaaaattaaatttagttacaaggatatatattagttatttggttatgtttgaaatatgtcttggctgtaactctagaaaaattcatattttaa |
34392726 |
T |
|
| Q |
101 |
ccaccaaatcaaacttttgcattcatagcaatttctaactttggttaaataatttatagttaccttgcaaagtttggagaaagaatgtttgcttgatgta |
200 |
Q |
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| T |
34392727 |
acaccaaatcaaacttttgcattcatagcaatttctaactttggttaaataatttatagttaccttgcaaagtttggagaaagaatgattgcttgatgta |
34392826 |
T |
|
| Q |
201 |
gtagtactaaaccttaacatacccaaatttggaacttggttattgaaaagtttagcaactctttcagaaacggaagtaattgattcactttgaacaaatc |
300 |
Q |
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| T |
34392827 |
gtagtactaaaccttaacatacccaaatttggaacttggttattgaaaagtttagcaactctttcagaaacggaagtaattgattcactttgaacaaatc |
34392926 |
T |
|
| Q |
301 |
ctgtagctaaaccaaacctattgaaaaccaattcacttccaattacttcatctgcacgtaaatgttcttcaacaaacctcttcaccataactcctggcat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34392927 |
ctgtagctaaaccaaacctattgaaaaccaattcacttccaattacttcatctgcacgtaaatgttcctcaacaaacctcttcaccataactcctggcat |
34393026 |
T |
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| Q |
401 |
ttttgttaccacaacg |
416 |
Q |
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| T |
34393027 |
ttttgttaccacaacg |
34393042 |
T |
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