View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8760_high_8 (Length: 328)
Name: NF8760_high_8
Description: NF8760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8760_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 1599137 - 1599005
Alignment:
| Q |
186 |
acaataagaaatcaaacattgaacattgaatatctaaagtaagaatcaaacatttctttaattaaaaatgacaactttgattaaagaaatttgggaatta |
285 |
Q |
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| T |
1599137 |
acaataagaaatcaaacattgaacattgaatatctaaagtaagaatcaaacatttctttaattaaaaatgacaactttgattaaagaaatttgggaatta |
1599038 |
T |
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| Q |
286 |
agaaagcgattatgaaataaagtgattattgat |
318 |
Q |
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| T |
1599037 |
agaaagcgattatgaaataaagtgattattgat |
1599005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 1599278 - 1599135
Alignment:
| Q |
7 |
gtgagatgaaagattatcnnnnnnngggaaaacttcatcatcatcactctctgttcttgcagcagcaattgaaatcttttttcttttcatgactacaata |
106 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1599278 |
gtgagatgaaagattatcaaaaaaagggaaaacttcatcatcatcactctctgttcttgcagcagcaattgaaatcttttttcttttcatgactacaata |
1599179 |
T |
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| Q |
107 |
agttgtaaaaagaaaaattaagttaaattcaatcacataaaaca |
150 |
Q |
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| T |
1599178 |
agttgtaaaaagaaaaattaagttaaattcaatcacataaaaca |
1599135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 61 - 166
Target Start/End: Original strand, 8530122 - 8530235
Alignment:
| Q |
61 |
tcttgcagcagcaattgaaatcttttttcttttcatgactacaataagttgtaaaaagaa--------aaattaagttaaattcaatcacataaaacagt |
152 |
Q |
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| T |
8530122 |
tcttgcagcggcaattgaaatcttttttcttttcatgactacaatcagttgtaaaaagaaaaataaacaaattaagttaaattcaatcacataaaaaagt |
8530221 |
T |
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| Q |
153 |
gattaaaatttgat |
166 |
Q |
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| T |
8530222 |
gattaaaatttgat |
8530235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 58 - 176
Target Start/End: Complemental strand, 9073644 - 9073518
Alignment:
| Q |
58 |
tgttcttgcagcagcaattgaaatcttttttcttttcatgactacaataagttgtaaaaag--------aaaaattaagttaaattcaatcacataaaac |
149 |
Q |
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||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
9073644 |
tgttcttgcagcatcaattgaaaccttttttcttttcatgactacaacaagttgtaaaaaggaaaataaacaaattaagttaaattcaatcacataaaaa |
9073545 |
T |
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| Q |
150 |
agtgattaaaatttgatagatatcata |
176 |
Q |
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|| |||||||||||||| ||||||||| |
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| T |
9073544 |
agggattaaaatttgattgatatcata |
9073518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 117
Target Start/End: Original strand, 8536741 - 8536775
Alignment:
| Q |
83 |
ttttttcttttcatgactacaataagttgtaaaaa |
117 |
Q |
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| T |
8536741 |
ttttttcttttcatgactacaataagttgtaaaaa |
8536775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 8530237 - 8530270
Alignment:
| Q |
191 |
aagaaatcaaacattgaacattgaatatctaaag |
224 |
Q |
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| T |
8530237 |
aagaaatcaaacattgaacattgaatatctaaag |
8530270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 9444280 - 9444448
Alignment:
| Q |
58 |
tgttcttgcagcagcaattgaaatcttttttcttttcatgactacaataagttgtaaaaagaa--------aaattaagttaaattcaatcacataaaac |
149 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9444280 |
tgttcttgcagcagcaattgaaatcttttttcttttcatgactacaataagttgtaaaaagaaaaataaacaaattaagttaaattcaatcacataaaaa |
9444379 |
T |
|
| Q |
150 |
agtgattaaaatttgatagatatcatactcatacatacaataagaaatcaaacattgaacattgaatatctaaag |
224 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9444380 |
agtgattaaaatttgatagata------tcatacatacaacaagaaatcaaacattgaacattgaatatctaaag |
9444448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 58 - 177
Target Start/End: Complemental strand, 48360768 - 48360641
Alignment:
| Q |
58 |
tgttcttgcagcagcaattgaaatcttttttcttttcatgactacaataagttgtaaaaagaa--------aaattaagttaaattcaatcacataaaac |
149 |
Q |
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|||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48360768 |
tgttcttgcaccggcaattgaaatctttttacttttcatgactacaataagttgtaaaaagaaaaataaacaaattaagttaaattcaatcacataaaaa |
48360669 |
T |
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| Q |
150 |
agtgattaaaatttgatagatatcatac |
177 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
48360668 |
agtgattaaaatttgatagatatcatac |
48360641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 48360521 - 48360477
Alignment:
| Q |
246 |
attaaaaatgacaactttgattaaagaaatttgggaattaagaaa |
290 |
Q |
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| T |
48360521 |
attaaaaattacaactttgattaaagaaatttgggaattaagaaa |
48360477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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