View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8760_high_9 (Length: 318)
Name: NF8760_high_9
Description: NF8760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8760_high_9 |
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| [»] scaffold0154 (1 HSPs) |
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Alignment Details
Target: scaffold0154 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 20996 - 20694
Alignment:
| Q |
1 |
acagtgcgaatctaaaaacaaatgggaagctatttccggagcaccgcaaccactcacccaaagccgataatcattatgtataataccgcgtcgaattaaa |
100 |
Q |
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| T |
20996 |
acagtgcgaatctaaaaacaaatgggaagctatttccggagcaccgcaactactcacccaaagccgagaatcattatgtgtaataccgcgtcgaattaaa |
20897 |
T |
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| Q |
101 |
ttatctttaattgtaatctattatggaagagttgcctcgcaaacaccaacaccttcaaggaaacatgtttatgggaaaagagattcagaaccgatgaaac |
200 |
Q |
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| T |
20896 |
ttatctttaattgtaatctattatggaagagttgcctcgcaaacaccaacaccttcaaagaaacatgtttatggaaaaagagattcagaaccgatgaaac |
20797 |
T |
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| Q |
201 |
tggaccgagacgttgttcagtcaa-tattccataaatttttaaattaaacnnnnnnnnnatcaaaaaattaaacctttttatctataccaatatataaag |
299 |
Q |
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| T |
20796 |
tggaccgagacgttgtttagtcaattattcaataaatttttaaattaaactttttttttatcaagaaattaaacctttttatctataccaatatataaag |
20697 |
T |
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| Q |
300 |
aag |
302 |
Q |
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||| |
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| T |
20696 |
aag |
20694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 11351097 - 11350911
Alignment:
| Q |
13 |
taaaaacaaatgggaagctatttccggagcaccgcaaccactcacccaaagccgataatcattatgtataataccgcgtcgaattaaattatctttaatt |
112 |
Q |
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| T |
11351097 |
taaaaacaaatgagaaaccgttttcggatcaccgcacccactcacacaaagccgagagtcattatgaataataccacgctgaattaaattatctttagtt |
11350998 |
T |
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| Q |
113 |
gtaa-tctattatggaagagttgcctcgcaaacaccaacaccttcaaggaaacatgtttatgggaaaagagattcagaaccgatgaa |
198 |
Q |
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| T |
11350997 |
gtcagtctattgcgtaagagccactacgcaaacaccaacaccttcaaggggacatgtttatggcaaaagagattcagaactgatgaa |
11350911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 171
Target Start/End: Complemental strand, 41368421 - 41368294
Alignment:
| Q |
45 |
cgcaaccactcacccaaagccgataatcattatgtataataccgcgtcgaattaaattatctttaattgtaat-ctattatggaagagttgcctcgcaaa |
143 |
Q |
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||||||||||||| ||||| || | |||||||||| |||||| || ||| |||||||||||||| |||| | ||||||||||||||| || || ||| |
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| T |
41368421 |
cgcaaccactcacgcaaagtcgtaagtcattatgtaaaataccacgacgagttaaattatctttagttgtcagactattatggaagagtcaccacgaaaa |
41368322 |
T |
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| Q |
144 |
caccaacaccttcaaggaaacatgttta |
171 |
Q |
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| T |
41368321 |
cactaacaccttcaagggaacatgttta |
41368294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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