View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8760_low_1 (Length: 782)
Name: NF8760_low_1
Description: NF8760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8760_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 501
Target Start/End: Complemental strand, 54984956 - 54984473
Alignment:
| Q |
18 |
gaacctaagataagcttaggatgttatgttaaaaaaccaagtaaccaacgcaaacattatgtgaaactctaatcccgattatcacaataaactagtcata |
117 |
Q |
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| T |
54984956 |
gaacctaagataagcttaggatgttatgttaaaaaaccaagtaaccaacgcaaacattatgtgaaactctaatcccgattatcacaataaactagtcata |
54984857 |
T |
|
| Q |
118 |
tttatcaacnnnnnnnn-gtgtcctataccactcaattttgtggcttattaagaagcaaggtgcctgaaaaattaccaagattcaacaatatctatcctc |
216 |
Q |
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| T |
54984856 |
tttatcaacaaaaaaaaagtgtcctataccactcaattttgtggcttattaagaagcaaggtgcctgaaaaattaccaagattcaacaatatctatcctc |
54984757 |
T |
|
| Q |
217 |
ggtgagaaaatcatagaaagatacagcacatccattttgtggtgtacttcagaagccacaacacacattttatttggttttcattctcttacatttcaca |
316 |
Q |
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|| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54984756 |
ggcgagaaaattatagaaagatacagcacttccattttgtggtgtacttcagaagccacaacacacattttatttggttttcattctcttacatttcaca |
54984657 |
T |
|
| Q |
317 |
atttgnnnnnnncaacaataaatttattaatgatcaaatctttgcacacaacgaactaaaactggaaagacaaaaagtacataacaacttgcaccaaagg |
416 |
Q |
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| T |
54984656 |
atttgttttttt-aacaataaatttattaatgatcaaatctttgcatacgacgaactaaaactggaaagataaaaagtacataacaacttgcgccaaagg |
54984558 |
T |
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| Q |
417 |
aggagcatccaagagaaaattcaaacaccatacaacataaacaccaataaaaacacgactcaacaaaaggtaccaccaacacgaa |
501 |
Q |
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| T |
54984557 |
aggagcatccaagagaaaattcaaacaccatacaacataaacaccaataaaaacacgactcaacaaaaggtaccaccaacacgaa |
54984473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 563 - 771
Target Start/End: Complemental strand, 54984411 - 54984203
Alignment:
| Q |
563 |
tttcaagaaattctgataagcatttgattaaattttgcattgatcaattggtcttccgtagggagaaatctttggatacaaaatagcataatctttcaca |
662 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
54984411 |
tttcaagaaattctgataagcatttgattaaattttgcattgatcaattggtcttccgtaaggagaaatctttggatacaaaatagcataatctttcaca |
54984312 |
T |
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| Q |
663 |
gttttgtataatactggccttgactcattcactagtttgtcaattggtttgacctctttctctgaatttgggcgacatgtcataactactgtgagccttt |
762 |
Q |
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| T |
54984311 |
gttttgtataatactggccttgactcattcactagtttgtcaattggtttgacctctttctctgaatttgggcgacatgtcataactactgtgagccttt |
54984212 |
T |
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| Q |
763 |
ccttctctg |
771 |
Q |
| |
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|||| |||| |
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| T |
54984211 |
ccttttctg |
54984203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 646 - 736
Target Start/End: Original strand, 31320337 - 31320427
Alignment:
| Q |
646 |
tagcataatctttcacagttttgtataatactggccttgactcattcactagtttgtcaattggtttgacctctttctctgaatttgggcg |
736 |
Q |
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||||||||||||| || | |||||||||||||||||||||||| ||||||||||||||||| |||| | ||||||||||||||||||||| |
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| T |
31320337 |
tagcataatcttttactggtttgtataatactggccttgactcgttcactagtttgtcaatcggttgaatctctttctctgaatttgggcg |
31320427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 650 - 766
Target Start/End: Original strand, 31326377 - 31326493
Alignment:
| Q |
650 |
ataatctttcacagttttgtataatactggccttgactcattcactagtttgtcaattggtttgacctctttctctgaatttgggcgacatgtcataact |
749 |
Q |
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||||||||| || | | ||||| ||| |||||||||||| ||||||||||||||||| |||| | ||||||||| |||| |||||| ||| |||| || |
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| T |
31326377 |
ataatcttttactggtctgtatgataatggccttgactcgttcactagtttgtcaatcggttgaatctctttctccgaatctgggcggcataacatagct |
31326476 |
T |
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| Q |
750 |
actgtgagcctttcctt |
766 |
Q |
| |
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|||| ||||||| |||| |
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| T |
31326477 |
actgagagccttgcctt |
31326493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 273 - 316
Target Start/End: Original strand, 31320213 - 31320256
Alignment:
| Q |
273 |
cacaacacacattttatttggttttcattctcttacatttcaca |
316 |
Q |
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||||||||||||||||||| |||||||||||||| ||| ||||| |
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| T |
31320213 |
cacaacacacattttatttcgttttcattctctttcatctcaca |
31320256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 273 - 306
Target Start/End: Original strand, 31326250 - 31326283
Alignment:
| Q |
273 |
cacaacacacattttatttggttttcattctctt |
306 |
Q |
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||||||||||||||||||| |||||||||||||| |
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| T |
31326250 |
cacaacacacattttatttcgttttcattctctt |
31326283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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