View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8760_low_10 (Length: 370)

Name: NF8760_low_10
Description: NF8760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8760_low_10
NF8760_low_10
[»] chr2 (3 HSPs)
chr2 (19-360)||(40093926-40094267)
chr2 (23-360)||(40063295-40063631)
chr2 (23-360)||(40081646-40081981)
[»] chr4 (1 HSPs)
chr4 (116-219)||(22012288-22012391)


Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 40094267 - 40093926
Alignment:
Q  19 agatattacctgattatgattaggacagttgagcaacagtgcaggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtggg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40094267 agatattacctgattatgattaggacagttgagcaacagtgcaggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtggg 40094168  T
Q  119 tgagaatcagatacatgggcacacacacttcctagctgttttgtagcaaaagatatttgtgttggatcaccaccactttcctcaaacaatacaagagtgt 218  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40094167 tgagaatcagatacatgggcacacacacttcctatctgttttgtagcaaaagatatttgtgttggatcaccaccactttcctcaaacaatacaagagtgt 40094068  T
Q  219 ttccgtttggtttcaaaaacgactgtggcacgtggtatctgtgagatgggattaatgtcgcagtcacatcatagatcaagannnnnnnnctcatgtttaa 318  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||        |||||||||||    
T  40094067 ttccatttggtttcaaaaacgactgtggcacgtggtatctgtgagatgagattaatgtctcaatcacatcatagatcaagattttttttctcatgtttaa 40093968  T
Q  319 actcttcttcattgaaaatttgcaacacttacaatgtctgtg 360  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  40093967 actcttcttcattgaaaatttgcaacacttacaatgtctgtg 40093926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 23 - 360
Target Start/End: Complemental strand, 40063631 - 40063295
Alignment:
Q  23 attacctgattatgattaggacagttgagcaacagtgcaggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgag 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||    
T  40063631 attacctgattatgattaggacagttgagcaacagtgcaggccctacttttccccatgatgttgtatcttggttccacaagtctatttgaggtgggtgag 40063532  T
Q  123 aatcagatacatgggcacacacacttcctagctgttttgtagcaaaagatatttgtgttggatcaccaccactttcctcaaacaatacaagagtgtttcc 222  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| ||    
T  40063531 aatcagatacatgggcacacaaactttctagctgttttgtagcaaaagctatttgtgttggatcaccgccattttcctcaaacaatacaagagtgttgcc 40063432  T
Q  223 gtttggtttcaaaaacgactgtggcacgtggtatctgtgagatgggattaatgtcgcagtcacatcatagatcaagannnnnnnnctcatgtttaaactc 322  Q
    ||||||||||||||||||  |||| || ||||||||| ||||||||||||||||| |||||||||| ||||||||||         ||||||||||||||    
T  40063431 gtttggtttcaaaaacgatcgtggtacatggtatctgcgagatgggattaatgtctcagtcacatcgtagatcaagatttttttt-tcatgtttaaactc 40063333  T
Q  323 ttcttcattgaaaatttgcaacacttacaatgtctgtg 360  Q
    || |||||||||||||||||||||||||||||||||||    
T  40063332 tttttcattgaaaatttgcaacacttacaatgtctgtg 40063295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 23 - 360
Target Start/End: Complemental strand, 40081981 - 40081646
Alignment:
Q  23 attacctgattatgattaggacagttgagcaacagtgcaggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgag 122  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40081981 attacctgattatgattaggacaactgagcaacagagcaggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgag 40081882  T
Q  123 aatcagatacatgggcacacacacttcctagctgttttgtagcaaaagatatttgtgttggatcaccaccactttcctcaaacaatacaagagtgtttcc 222  Q
    ||||||||||||| | |||||||||| | |||||||||||||||||||||||||| || |||||||| ||| ||||||||||||||||||||||||| ||    
T  40081881 aatcagatacatgtgaacacacactttccagctgttttgtagcaaaagatatttgggtcggatcaccgccattttcctcaaacaatacaagagtgttgcc 40081782  T
Q  223 gtttggtttcaaaaacgactgtggcacgtggtatctgtgagatgggattaatgtcgcagtcacatcatagatcaagannnnnnnnctcatgtttaaactc 322  Q
    ||||||||||||||||||  |||| || |||||||||  ||||| ||||| |||| |||| ||||||||||||||||         |  ||||||||||     
T  40081781 gtttggtttcaaaaacgatcgtggtacatggtatctgcaagatgcgattattgtctcagtaacatcatagatcaagattattttctt--tgtttaaactt 40081684  T
Q  323 ttcttcattgaaaatttgcaacacttacaatgtctgtg 360  Q
    || || ||||||||||||||||||||||||||||||||    
T  40081683 ttttttattgaaaatttgcaacacttacaatgtctgtg 40081646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 219
Target Start/End: Original strand, 22012288 - 22012391
Alignment:
Q  116 gggtgagaatcagatacatgggcacacacacttcctagctgttttgtagcaaaagatatttgtgttggatcaccaccactttcctcaaacaatacaagag 215  Q
    |||||||| |||| |||||| | |||||||||| ||| |||||||||| |||||||||||| ||| || || || || ||||||||||||||||||| ||    
T  22012288 gggtgagattcagttacatgtgaacacacactttctatctgttttgtaccaaaagatatttttgtagggtcgcctccgctttcctcaaacaatacaaaag 22012387  T
Q  216 tgtt 219  Q
    ||||    
T  22012388 tgtt 22012391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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