View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8760_low_13 (Length: 273)
Name: NF8760_low_13
Description: NF8760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8760_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 5948894 - 5949144
Alignment:
| Q |
19 |
ttaggttcttactaccctggatggagagccaatcgttgtttgatgaaagctgatgccaataaagatggactaatcagtggcgaggaaatcgacactttag |
118 |
Q |
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| T |
5948894 |
ttaggttcttactaccctggatggagagccaatcgttgtttgatgaaagctgatgccaataaagacggactaatcagtggcgaggaaatcgacactttag |
5948993 |
T |
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| Q |
119 |
ttgattatctcctcactcgtggttttggcaagaac---taattattataagaggtgatatatgatcaataatcaaaccctgctaatagctttaaggcagt |
215 |
Q |
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| T |
5948994 |
ttgattatctcctcactcgtggttttggcaagaactaataattattataagaggtgatatatgatcaataatcaaaccctgctaatagctttaaggcagt |
5949093 |
T |
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| Q |
216 |
atagtagtatatgcagtttatgtttatgttatcttagaaccctctctgctt |
266 |
Q |
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| T |
5949094 |
ttagtagtatatgcagtttatgtttatgttatcttagaaccctctgtgctt |
5949144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 5954541 - 5954770
Alignment:
| Q |
19 |
ttaggttcttactaccctggatggagagccaatcgttgtttgatgaaagctgatgccaataaagatggactaatcagtggcgaggaaatcgacactttag |
118 |
Q |
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| T |
5954541 |
ttaggttcttactaccctggattgagagccatattttgtttcatgaaagctgatgccaacaaagacggacaaatcagtggcgaggaaatcgacactttaa |
5954640 |
T |
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| Q |
119 |
ttgattatctcctcactcgtggttttggcaagaactaattattataagaggtgatatatgatcaataatcaaaccctgctaatagctttaaggcag--ta |
216 |
Q |
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| T |
5954641 |
ttgattatctccttacccgtggttttggcaagaactaattat--taagaggtgatatatgatcaataatcaaatcatgctaatagctttaatgcagtata |
5954738 |
T |
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| Q |
217 |
tagtag--tatatgcagtttatgtttatgtta |
246 |
Q |
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| T |
5954739 |
tagtagtatatatgcagtttgtgtttatgtta |
5954770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 5937703 - 5937836
Alignment:
| Q |
19 |
ttaggttcttactaccctggatggagagccaatcgttgtttgatgaaagctgatgccaataaagatggactaatcagtggcgaggaaatcgacactttag |
118 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||| | ||||||||| ||| ||||||||| ||||||||| |||||||| || |||||| |
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| T |
5937703 |
ttaggttcttactatcctggatggagggccaatcgttgtttggttaaagctgatttcaacaaagatggagaaatcagtggtgaggaaattgatactttaa |
5937802 |
T |
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| Q |
119 |
ttgattatctcctcactcgtggttttggcaagaa |
152 |
Q |
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| T |
5937803 |
ttgattatctccttacccgtggttttggaaagaa |
5937836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 5960800 - 5960894
Alignment:
| Q |
34 |
cctggatggagagccaatcgttgtttgatgaaagctgatgccaataaagatggactaatcagtggcgaggaaatcgacactttagttgattatct |
128 |
Q |
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| T |
5960800 |
cctggatggagagccatgcgttgtatggtcaatgttgatgccaacaatgatggacaaattagtggtgaggaaattgatactttagttgattatct |
5960894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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