View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8760_low_14 (Length: 248)
Name: NF8760_low_14
Description: NF8760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8760_low_14 |
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| [»] chr5 (7 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 39727090 - 39726860
Alignment:
| Q |
18 |
tttgcaagttgtgaaacaaaaatagagatatatgaattatgatcacattggtgccaagatgcctagtgaatagtgaagagttttctgcaacagaatggtg |
117 |
Q |
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| T |
39727090 |
tttgcaagttgtgaaacaaaaatagagatatatgaattatgatcacattggtgccaagatgcctagtgaatagtgaagagttttctgcaacagaatggtg |
39726991 |
T |
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| Q |
118 |
aaggtgtaaatatcacacattattaatatactttggtgtactttaggctactaaacataaacattaaacagaaattgcaaatagaaatagaaacaaccta |
217 |
Q |
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| T |
39726990 |
aaggtgtaaatatcacacattattaatatactttggtgtactttaggctactaaacataaacattaaacagaaattgcaaatagaaatagaaagaaccta |
39726891 |
T |
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| Q |
218 |
ataaatgaaaagcatcttccttgattgttgt |
248 |
Q |
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| T |
39726890 |
ataaatgaaaagcatcttccttgattgttgt |
39726860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 169 - 248
Target Start/End: Complemental strand, 39880330 - 39880251
Alignment:
| Q |
169 |
taaacataaacattaaacagaaattgcaaatagaaatagaaacaacctaataaatgaaaagcatcttccttgattgttgt |
248 |
Q |
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| T |
39880330 |
taaacataaacattaaacagaaattgcaaatagaaatagaaagaacctaataaatgaaaagcatcttccttgattgttgt |
39880251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 248
Target Start/End: Complemental strand, 38988207 - 38988134
Alignment:
| Q |
169 |
taaacataaacattaaacagaaattgcaaatagaaatagaaacaacctaataaatgaaaagcatcttccttgattgttgt |
248 |
Q |
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||||||||||||| |||||||||||||||||||||| | |||||||||||||| |||| |||||||||||||||| |
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| T |
38988207 |
taaacataaacatgaaacagaaattgcaaatagaaaga------acctaataaatgaagagcagcttccttgattgttgt |
38988134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 248
Target Start/End: Complemental strand, 40418785 - 40418712
Alignment:
| Q |
169 |
taaacataaacattaaacagaaattgcaaatagaaatagaaacaacctaataaatgaaaagcatcttccttgattgttgt |
248 |
Q |
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||||||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| |||| |
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| T |
40418785 |
taaacataaacatgaaacaaaaattgcaaatagaaaga------acctaataaatgaaaagcatcttccttgatttttgt |
40418712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 40419874 - 40419816
Alignment:
| Q |
18 |
tttgcaagttgtgaaacaaaaatagagatatatgaattatgatcacattggtgccaagatgcctag |
83 |
Q |
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| T |
40419874 |
tttgcaagttgtgaaacaaaaatagagatat-------atgatcacattggtgccaagctgcctag |
40419816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 3299992 - 3299954
Alignment:
| Q |
202 |
aaatagaaacaacctaataaatgaaaagcatcttccttg |
240 |
Q |
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| T |
3299992 |
aaatagaaaaaagctaataaatgaaaagcatcttccttg |
3299954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 3392885 - 3392847
Alignment:
| Q |
202 |
aaatagaaacaacctaataaatgaaaagcatcttccttg |
240 |
Q |
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| T |
3392885 |
aaatagaaaaaagctaataaatgaaaagcatcttccttg |
3392847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 25911866 - 25911945
Alignment:
| Q |
169 |
taaacataaacattaaacagaaattgcaaatagaaatagaaacaacctaataaatgaaaagcatcttccttgattgttgt |
248 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||| |
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| T |
25911866 |
taaacataaacatgaaacagaaattgcaaatagaaatagaaagaacctaataaatgtaaagcaccttccttgattgttgt |
25911945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 44444395 - 44444439
Alignment:
| Q |
202 |
aaatagaaacaacctaataaatgaaaagcatcttccttgattgtt |
246 |
Q |
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||||||||| |||||||||||||||| |||| ||||||||||||| |
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| T |
44444395 |
aaatagaaataacctaataaatgaaaggcatattccttgattgtt |
44444439 |
T |
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