View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8760_low_15 (Length: 248)
Name: NF8760_low_15
Description: NF8760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8760_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 16644662 - 16644903
Alignment:
| Q |
1 |
cctttgcacttggtaatcacaatattcaacccaaattatggaacctacaagaccaaaaataccactggttatcttagttttcaagacactctagtagcca |
100 |
Q |
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| T |
16644662 |
cctttgcacttggtaatcacaatattcaacccaaattatggaacctacaagaccaaaaataccactggttatcttagttttcaagacactctagtagcca |
16644761 |
T |
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| Q |
101 |
tagctcctataggaccaaacaaactcccaagtcatagaacaactaatgtgactgctactgctggtcttatgaatgaaaagttgatatctaatgataagtt |
200 |
Q |
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| T |
16644762 |
tagctcctataggaccaaacaaactcccaagtcatagaacaactaatgtgactgctactgctggtcttatgaatgaaaagttgatatctaatgataagtt |
16644861 |
T |
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| Q |
201 |
tttggtggatgttgcacatggatcttttaatctaacaccaaa |
242 |
Q |
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| T |
16644862 |
tttggtggatgttgcacatggatcttttaatctaacagcaaa |
16644903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 16619694 - 16619924
Alignment:
| Q |
1 |
cctttgcacttggtaatcacaatattcaacccaaattatggaacctacaagaccaaaaataccactggttatcttagttttcaagacactctagtagcca |
100 |
Q |
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||||| ||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
16619694 |
cctttacacatggtagtcacaatattcaacccaaattatggaacttacaagaccaaaaataccactggttatcttaattatcaagacactctagtagcca |
16619793 |
T |
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| Q |
101 |
tagctcctataggaccaaacaaactcccaagtcatagaacaactaatgtgactgctactgctggtcttatgaatgaaaagttgatatctaatgataagtt |
200 |
Q |
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| T |
16619794 |
tagctcctataggaccaaaaaaactccctggtcatagaacaacaaatgtgagtgctactgcaggtcttatgagtgtagagttgatatctaatgataagtt |
16619893 |
T |
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| Q |
201 |
tttggtggatgttgcacatggatcttttaat |
231 |
Q |
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| T |
16619894 |
tttggtggatgttgcagatggatcttttaat |
16619924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 16686999 - 16687092
Alignment:
| Q |
138 |
aacaactaatgtgactgctactgctggtcttatgaatgaaaagttgatatctaatgataagtttttggtggatgttgcacatggatcttttaat |
231 |
Q |
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|||||||||||||| || |||||| |||||||||| | | || ||||| ||||||| || ||| ||| ||||||| | |||||||||||||| |
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| T |
16686999 |
aacaactaatgtgagtgttactgcgggtcttatgagtcacaaattgatgactaatgaaaattttgtggctgatgttggagatggatcttttaat |
16687092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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