View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8760_low_18 (Length: 219)
Name: NF8760_low_18
Description: NF8760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8760_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 30386672 - 30386865
Alignment:
| Q |
1 |
agattttttgttgttgggtttattttgggattgtatgtttgttagcttagatttatcttgttcttattacgtggtaaggtccttacgtgtgatttggata |
100 |
Q |
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| T |
30386672 |
agattttttgttgttgggtttattttgggattgtatgtttgttagcttagatttatcttgttcttattacgtggtaaggtccttacgtgtgatttggata |
30386771 |
T |
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| Q |
101 |
ttgtgattctgtgttagtccaaggcatatttttacacatggcaaccatgcaatgttatggagctgaattttagataacaaacatactccatccg |
194 |
Q |
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| T |
30386772 |
ttgtgattctgtgttagtccaaggcatatttttacacatggcaaccatgcaatgttatggagctgaattttagataacaaacctactccatccg |
30386865 |
T |
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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 8946464 - 8946382
Alignment:
| Q |
99 |
tattgtgattctgtgttagtccaaggcatatttttacacatggcaaccatgcaatgttatggagctgaattttagataacaaac |
182 |
Q |
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| T |
8946464 |
tattgtgattctatgttagtccaaggcatatctttacacatggctaccatgaaatattat-gagctgaatttcaggtaacaaac |
8946382 |
T |
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