View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8760_low_2 (Length: 669)
Name: NF8760_low_2
Description: NF8760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8760_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 526; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 654
Target Start/End: Original strand, 35951936 - 35952593
Alignment:
| Q |
1 |
tagttgtgccttcgtgattcgggaggacagtttgtagcagcgcaaacgatgtctcgacaagcacatacattggttttagagggagaggcgatagctatcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
35951936 |
tagttgtgccttcgtgattcgggaggacagtttgtagcagcgcaaacgatgccgcgacaatcacatacgttggttttagagggagaggcgatagctatcc |
35952035 |
T |
|
| Q |
101 |
gttttgcccatgctaaggggtgggatatagtgatttttgaataagattctagtactttggttgatgccctttcaacgcaacgacatgaagcttctgaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35952036 |
gttttgcccatgctaaggggtgggatatagtgatttttgaataagattctagtaatttggttaatgccctttcaacgcaacgacatgaagcttctgaatt |
35952135 |
T |
|
| Q |
201 |
ttatgcaataatttctgctattaagaactagttatcggtgaaattttattaggcgataatcgaacgtgacaactcatacattagttaggacgattg---t |
297 |
Q |
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| T |
35952136 |
ttatgcaataatttctgctattaagaaccagttatcggtgaaa-tttattagacgataagcgaacatggcaactcatactttagttaggacaattgtttt |
35952234 |
T |
|
| Q |
298 |
tttttgggctagtcaccaaatttttaaatattctcctacttgtattgaa-cttttcttattaatgatacgagttaaccgagcttctgaag-nnnnnnnnn |
395 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35952235 |
tttttgggctagtcaccaaatttttaaatattctcctacttgtattgaaccttttcttattaatgatacgagttaaccgagcttctgaagaaaaaaaaaa |
35952334 |
T |
|
| Q |
396 |
tgatatgcctagcttcgaatctacttctttccaatatgtgagagaggataaaatccaaaatagcaagttatatagtaaatgaataagaacaagacacacg |
495 |
Q |
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| T |
35952335 |
tgatatgcctagcttcgaatcttcttctttccgatatgtgagagaggataaaatccaaaatagcaagttatatagtaaatgaataagaacaagacacacg |
35952434 |
T |
|
| Q |
496 |
agaatatagattcatccaagtttcgtgtagcaccgcttgttttatttatggtattattagacagtagtttaacttattatcatcacaaagagtgattaat |
595 |
Q |
| |
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|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35952435 |
agaatatatattcatccaagttacgtgtagcaccgcttgttttatttatggtattattagacagtagtttaacttattatcatcacaaagagtgattaat |
35952534 |
T |
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| Q |
596 |
tcgcattatttaacagttaacaaagacatagttaaccgtaaggtgaccctgctggtaac |
654 |
Q |
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| T |
35952535 |
tcgcattatttaacagttaacaaagacatagttaaccgtaaggtgaccctgctggtaac |
35952593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 22930038 - 22929797
Alignment:
| Q |
7 |
tgccttcgtgattcgggaggacagtttgtagcagcgcaaacgatgtctcgacaagcacatacattggttttagagggagaggcgat------------ag |
94 |
Q |
| |
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| T |
22930038 |
tgccttcgtgaatcgggaggtacgtttgtagcagcgcaaacgatgtggcagcaagcacatatgtcggttttaaaggaagaggtgatggcccttttggaag |
22929939 |
T |
|
| Q |
95 |
ctatccgttttgcccatgctaaggggtgggatatagtgatttttgaataagattctagtactttggttgatgccctttcaacgcaacgacatgaagcttc |
194 |
Q |
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|||||| ||||||| |||||||||||||| || |||||||||||||| ||||| ||||||||||||| | ||||| |||||||||| ||||| |||||| |
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| T |
22929938 |
ctatccaatttgcccgtgctaaggggtggggtaaagtgatttttgaatcagattatagtactttggttaacgccctctcaacgcaaccacatggagcttc |
22929839 |
T |
|
| Q |
195 |
tgaattttatgcaataatttctgctattaagaactagttatc |
236 |
Q |
| |
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||| |||||||||||| |||||| |||||||||| ||||||| |
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| T |
22929838 |
tgagttttatgcaatagtttctgttattaagaaccagttatc |
22929797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 432 - 560
Target Start/End: Original strand, 35946194 - 35946327
Alignment:
| Q |
432 |
tgtgagagaggataaaatccaaaatagcaagttatata--gtaaatga---ataagaac-aagacacacgagaatatagattcatccaagttt-cgtgta |
524 |
Q |
| |
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|||| ||||| ||||||||||||||||||||||||||| |||||||| ||||| || ||||| || ||||||||||||||||||||| | | |||| |
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| T |
35946194 |
tgtgtgagagaataaaatccaaaatagcaagttatatatagtaaatgataaataagtactaagaccca--agaatatagattcatccaagtatacatgta |
35946291 |
T |
|
| Q |
525 |
gcaccgcttgttttatttatggtattattagacagt |
560 |
Q |
| |
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|||| ||||||||||||||| |||||||||| |||| |
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| T |
35946292 |
gcactgcttgttttatttatagtattattaggcagt |
35946327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 569 - 654
Target Start/End: Original strand, 35946363 - 35946448
Alignment:
| Q |
569 |
ttattatcatcacaaagagtgattaattcgcattatttaacagttaacaaagacatagttaaccgtaaggtgaccctgctggtaac |
654 |
Q |
| |
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||||||||||| ||||||| |||| |||||| ||| |||||| |||||||||||||| | ||| |||||||||||| |||||||| |
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| T |
35946363 |
ttattatcatcccaaagagggattcattcgcgttaattaacaattaacaaagacataatcaactataaggtgacccttctggtaac |
35946448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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