View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8760_low_4 (Length: 503)
Name: NF8760_low_4
Description: NF8760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8760_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 40093792 - 40093305
Alignment:
| Q |
1 |
ctcgccttttcccatccccgtgaagtcaatcgcaactggattactgccggatggagcatcaaagtttgtctaatgcaacatgcatgacattggttagtag |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093792 |
ctcgccttttcccatccctgtgaagtcaatcacaactggattactgccggatggagcatcaaagtttgtctaatgcaacatgcatgacattggttagtag |
40093693 |
T |
|
| Q |
101 |
caaaaaacatttttcatatagtggcgttcttttaatttgaaattccataacttatatcaagggaaacaataaattgaaaattaaattaccttgtaccaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093692 |
caaaaaacatttttcatatagtggcgttcttttaatttgaaattccataacttatatcaagggaaacaataaattgaaaattaaattaccttgtaccaaa |
40093593 |
T |
|
| Q |
201 |
tcaatggttgtttcttagggaaagtagtctttgaattccacgctccggaacttccactagagagacctaaatcttcaccttttaggccaacctgtatcaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093592 |
tcaatggttgtttcttagggaaagtagtctttgaattccacgctccggaacttccactagagagacctaaatcttcaccttttaggccaacctgtatcaa |
40093493 |
T |
|
| Q |
301 |
aagaattaactccattaactatgtaagactaataaatagtcttcgatcaaaagtgaagactgacctgatatgtccacttccgagaggagagatcaagagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093492 |
aagaattaactccattaactatgtaagactaacaaatagtcttcgatcaaaagtgaagactgacctgatatgtccacttccgagaggagagatcaagagt |
40093393 |
T |
|
| Q |
401 |
cttgttgccattcttcaaacctttcaatatcactggaccggtgatccccgctccccatgtgtcnnnnnnngctccatagttctgatgt |
488 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40093392 |
cttgttgccattcttcaaacctttcaatatcactggaccggtgatccccgctccccatgtgtcaaaaaaagctccatagttctgatgt |
40093305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 5 - 488
Target Start/End: Complemental strand, 40063157 - 40062653
Alignment:
| Q |
5 |
ccttttcccatccccgtgaagtcaatcgcaactggattactgccggatggagcatcaaagtttgtctaatgcaacatgcatgacattggttagtagcaaa |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
40063157 |
ccttttcccatccccgtgaagtcaatcgcaactggattactgccggatggagcatcaaagtttgtctaatgcaacatgtatgacattggttagtaccaaa |
40063058 |
T |
|
| Q |
105 |
aaacatttttcatatagtggcgttcttttaatttgaaattccataacttatatcaagggaaacaataaattgaaaattaaattaccttgtaccaaatcaa |
204 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40063057 |
aaacatttttcatatagtggcattcttttaatttgaaattccataacttatataaagggaaacaataaattgaaaataaaattaccttgtaccaaatcaa |
40062958 |
T |
|
| Q |
205 |
tggttgtttcttagggaaagtagtctttgaattccacgctccggaacttccactagagagacctaaatcttcaccttttaggccaacctgtatcaaaaga |
304 |
Q |
| |
|
|||||| |||||||||||||||| || ||| ||||| || ||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
40062957 |
tggttgattcttagggaaagtagactgtgagttccaaccttcggaacttccactggacagacctaaatcttcaccttttaggccaacctgtatcaataga |
40062858 |
T |
|
| Q |
305 |
attaactccattaactat---------gtaagactaataaat------------agtcttcgatcaaaagtgaagactgacctgatatgtccacttccga |
383 |
Q |
| |
|
||||||||||||||| || |||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||| || |
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| T |
40062857 |
attaactccattaacaatcaatctccattaagactaataaatagtctttgatcaagtctttgatcaaaagttaagactgacctgatatgtccacttctga |
40062758 |
T |
|
| Q |
384 |
gaggagagatcaagagtcttgttgccattcttcaaacctttcaatatcactggaccggtgatccccgctccccatgtgtcnnnnnnngctccatagttct |
483 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||| |
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|
| T |
40062757 |
gaggagagatcaagagtgttgttgccattcttcaaacctttcaatgttactggaccggtgatccccgctccccatctgtcaaaaaaagctccatagttct |
40062658 |
T |
|
| Q |
484 |
gatgt |
488 |
Q |
| |
|
||||| |
|
|
| T |
40062657 |
gatgt |
40062653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 5 - 488
Target Start/End: Complemental strand, 40081508 - 40081002
Alignment:
| Q |
5 |
ccttttcccatccccgtgaagtcaatcgcaactggattactgccggatggagcatcaaagtttgtctaatgcaacatgcatgacattggttagtagcaaa |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||| |
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|
| T |
40081508 |
ccttttcccatccccgtgaagtcaatcgcaactggattactgccggatggagcatcaaagtttgtctagtgcaacatgtattacattggttagtagcaaa |
40081409 |
T |
|
| Q |
105 |
aaa-catttttcatatagtggcgttcttttaatttgaaattccataacttatatcaagggaaacaataaattgaaaattaaattaccttgtaccaaatca |
203 |
Q |
| |
|
||| |||||||||||||||||| || ||||||||||||||| | |||||||||||||||||||||||||||||||| ||| |||||||||||||| || |
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|
| T |
40081408 |
aaaacatttttcatatagtggcatttccttaatttgaaattcccttacttatatcaagggaaacaataaattgaaaataaaactaccttgtaccaaacca |
40081309 |
T |
|
| Q |
204 |
atggttgtttcttagggaaagtagtctttgaattccacgctccggaacttccactagagagacctaaatcttcaccttttaggccaacctgtatcaaaag |
303 |
Q |
| |
|
||||||| ||||||||| |||||| || |||||||||| |||| |||||||||||||| |||||||||||||| ||||||||||||| ||||||| ||| |
|
|
| T |
40081308 |
atggttggttcttagggtaagtagactgtgaattccaccctccagaacttccactagacagacctaaatcttcgccttttaggccaatctgtatcgaaaa |
40081209 |
T |
|
| Q |
304 |
aattaactccattaactatgt---------------------aagactaataaatagtcttcgatc-aaaagtgaagactgacctgatatgtccacttcc |
381 |
Q |
| |
|
|||||||||||||||| |||| |||| ||||||||||| ||||||| |||| | |||| ||||||||||||||||||||| |
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|
| T |
40081208 |
aattaactccattaacaatgtattccattaaagtgataaagaaagaataataaatagttttcgatcaaaaatttaagattgacctgatatgtccacttcc |
40081109 |
T |
|
| Q |
382 |
gagaggagagatcaagagtcttgttgccattcttcaaacctttcaatatcactggaccggtgatccccgctccccatgtgtcnnnnnnngctccatagtt |
481 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||| ||||||||||| |
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|
| T |
40081108 |
gagaggagagatcaagagtgttgttgccattcttcaaacctttcaatatcacgggaccggtgatccctgctcccactgtgtcaaaaaaggctccatagtt |
40081009 |
T |
|
| Q |
482 |
ctgatgt |
488 |
Q |
| |
|
||||||| |
|
|
| T |
40081008 |
ctgatgt |
40081002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 22012686 - 22012756
Alignment:
| Q |
2 |
tcgccttttcccatccccgtgaagtcaatcgcaactggattactgccggatggagcatcaaagtttgtcta |
72 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| || ||||| ||||| |||||| ||||||| ||||| |
|
|
| T |
22012686 |
tcgccttttcccatccccgtgaagtcgattgcaaccgggttacttccggagggagcaacaaagttcgtcta |
22012756 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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