View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8760_low_5 (Length: 469)

Name: NF8760_low_5
Description: NF8760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8760_low_5
NF8760_low_5
[»] chr8 (10 HSPs)
chr8 (109-181)||(30444928-30445000)
chr8 (110-176)||(34008802-34008868)
chr8 (110-179)||(26520435-26520504)
chr8 (425-462)||(40482523-40482560)
chr8 (112-159)||(15186815-15186862)
chr8 (110-176)||(29611391-29611457)
chr8 (115-182)||(42739946-42740013)
chr8 (113-159)||(3853654-3853700)
chr8 (113-159)||(3858112-3858158)
chr8 (110-159)||(44889392-44889441)
[»] chr7 (10 HSPs)
chr7 (108-181)||(30080771-30080844)
chr7 (110-176)||(30587875-30587941)
chr7 (110-176)||(32650594-32650660)
chr7 (113-176)||(40853990-40854053)
chr7 (108-159)||(25189196-25189247)
chr7 (110-176)||(13814966-13815032)
chr7 (110-176)||(14790135-14790200)
chr7 (114-176)||(19865530-19865592)
chr7 (110-146)||(3905631-3905667)
chr7 (110-146)||(40495281-40495317)
[»] chr5 (11 HSPs)
chr5 (113-182)||(15270840-15270909)
chr5 (110-176)||(33146194-33146260)
chr5 (110-176)||(34105092-34105158)
chr5 (110-181)||(22305110-22305181)
chr5 (110-159)||(22766990-22767039)
chr5 (110-158)||(37090320-37090368)
chr5 (109-159)||(25935272-25935322)
chr5 (110-176)||(28490014-28490079)
chr5 (109-159)||(37722876-37722926)
chr5 (110-159)||(8674459-8674508)
chr5 (114-175)||(28489485-28489546)
[»] chr4 (12 HSPs)
chr4 (110-159)||(41139511-41139560)
chr4 (108-159)||(42776675-42776726)
chr4 (110-176)||(42775626-42775692)
chr4 (110-176)||(53760776-53760842)
chr4 (110-159)||(29091175-29091224)
chr4 (113-176)||(26250984-26251047)
chr4 (122-176)||(4441412-4441466)
chr4 (110-176)||(56339154-56339220)
chr4 (114-159)||(16300209-16300254)
chr4 (109-182)||(21012561-21012634)
chr4 (110-159)||(26534531-26534580)
chr4 (110-159)||(40548204-40548253)
[»] chr3 (12 HSPs)
chr3 (108-181)||(54761547-54761620)
chr3 (108-174)||(55460363-55460429)
chr3 (114-182)||(332051-332119)
chr3 (110-182)||(2104749-2104821)
chr3 (110-182)||(9007440-9007512)
chr3 (113-176)||(46429417-46429480)
chr3 (108-159)||(13176545-13176596)
chr3 (108-159)||(13339446-13339497)
chr3 (110-161)||(26323392-26323443)
chr3 (113-176)||(38506864-38506927)
chr3 (110-159)||(21307517-21307566)
chr3 (108-176)||(47714290-47714359)
[»] chr2 (12 HSPs)
chr2 (108-176)||(20935728-20935795)
chr2 (108-176)||(44205642-44205710)
chr2 (113-176)||(14537274-14537337)
chr2 (110-181)||(41585676-41585747)
chr2 (110-176)||(8736427-8736493)
chr2 (122-182)||(11684674-11684734)
chr2 (113-176)||(3345766-3345829)
chr2 (113-176)||(11824755-11824818)
chr2 (109-159)||(11532238-11532288)
chr2 (114-176)||(11607242-11607304)
chr2 (113-159)||(40026102-40026148)
chr2 (110-159)||(32839634-32839683)
[»] chr1 (14 HSPs)
chr1 (113-181)||(15245458-15245526)
chr1 (110-174)||(44571225-44571288)
chr1 (113-176)||(32572943-32573006)
chr1 (110-181)||(50471766-50471837)
chr1 (108-173)||(52135609-52135674)
chr1 (110-174)||(37447345-37447409)
chr1 (113-176)||(27935507-27935569)
chr1 (113-175)||(23536142-23536204)
chr1 (109-159)||(26501064-26501114)
chr1 (110-176)||(41822529-41822595)
chr1 (110-176)||(48953590-48953655)
chr1 (113-182)||(40264045-40264114)
chr1 (110-159)||(47165198-47165247)
chr1 (110-158)||(39887166-39887214)
[»] chr6 (3 HSPs)
chr6 (110-181)||(8475177-8475248)
chr6 (114-181)||(1195349-1195416)
chr6 (113-159)||(776155-776201)
[»] scaffold0039 (1 HSPs)
scaffold0039 (110-176)||(109052-109118)
[»] scaffold0169 (1 HSPs)
scaffold0169 (110-159)||(4113-4162)
[»] scaffold0002 (1 HSPs)
scaffold0002 (108-159)||(130392-130443)
[»] scaffold0027 (1 HSPs)
scaffold0027 (109-159)||(10924-10974)
[»] scaffold0065 (1 HSPs)
scaffold0065 (110-182)||(9572-9645)


Alignment Details
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 30444928 - 30445000
Alignment:
Q  109 catccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacactta 181  Q
    |||||||||||| |||||||| | ||||||||||||||  |||||||||||||||| ||||||||||| ||||    
T  30444928 catccaaacaatggaattcacctcaaagtatttgaattccctcaaaacattcctccatccaaacacactctta 30445000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 34008868 - 34008802
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    ||||||||||| |||||||| | ||||||||||||||  ||||||||||||| || |||||||||||    
T  34008868 atccaaacaatggaattcacctcaaagtatttgaattccctcaaaacattcccccatccaaacacac 34008802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 26520435 - 26520504
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacact 179  Q
    ||||||||||| |||||||| | ||||||||||||||  |||||||||||||  | ||||||||||||||    
T  26520435 atccaaacaatggaattcacctcaaagtatttgaattccctcaaaacattccctcatccaaacacacact 26520504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 462
Target Start/End: Original strand, 40482523 - 40482560
Alignment:
Q  425 cccactcaaactaatacaaccgtcatcaagtataatct 462  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40482523 cccactcaaactaatacaaccgtcatcaagtataatct 40482560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 15186815 - 15186862
Alignment:
Q  112 ccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    |||||||||||||||||| | ||| |||||||||||||||||||||||    
T  15186815 ccaaacaatagaattcaccttaaactatttgaatttactcaaaacatt 15186862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 29611457 - 29611391
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    |||||||||||  ||||||| | ||||||||||||||  ||||||||||||| || |||||||||||    
T  29611457 atccaaacaatgaaattcacctcaaagtatttgaattccctcaaaacattcccccatccaaacacac 29611391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 42740013 - 42739946
Alignment:
Q  115 aacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacacttaa 182  Q
    ||||||| ||||||  | |||||| |||||||  |||||||||||||||| ||||||||||| |||||    
T  42740013 aacaataaaattcatctcaaagtagttgaattccctcaaaacattcctccatccaaacacactcttaa 42739946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 3853700 - 3853654
Alignment:
Q  113 caaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    ||||||||||||||||| | |||||| |||||||| |||||||||||    
T  3853700 caaacaatagaattcacctcaaagtagttgaatttcctcaaaacatt 3853654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 3858158 - 3858112
Alignment:
Q  113 caaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    ||||||||||||||||| | |||||| |||||||| |||||||||||    
T  3858158 caaacaatagaattcacctcaaagtagttgaatttcctcaaaacatt 3858112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 44889441 - 44889392
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    ||||||||||| |||||||| | ||||||||||||||  |||||||||||    
T  44889441 atccaaacaatggaattcacatcaaagtatttgaattccctcaaaacatt 44889392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 108 - 181
Target Start/End: Original strand, 30080771 - 30080844
Alignment:
Q  108 tcatccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacactta 181  Q
    ||||||||||||| |||||||| | ||||||||| ||||| ||||||||||||| || ||||||||||| ||||    
T  30080771 tcatccaaacaatggaattcacctgaaagtatttaaatttcctcaaaacattcccccatccaaacacactctta 30080844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 30587875 - 30587941
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    ||||||||||| |||||||| | ||||||||||||||  ||||||||||||| || |||||||||||    
T  30587875 atccaaacaatggaattcacattaaagtatttgaattccctcaaaacattcccccatccaaacacac 30587941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 32650660 - 32650594
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    |||||||||||| ||||||| | ||||||||||||||  |||||||||||||||| || ||||||||    
T  32650660 atccaaacaataaaattcacctcaaagtatttgaattccctcaaaacattcctccatcgaaacacac 32650594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 40854053 - 40853990
Alignment:
Q  113 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    ||||||||||||||||| | |||||| |||||||  ||||||||||||| || |||||||||||    
T  40854053 caaacaatagaattcaccttaaagtagttgaattccctcaaaacattcccccatccaaacacac 40853990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 25189196 - 25189247
Alignment:
Q  108 tcatccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    |||||||||||||  ||||||||| ||||||||||||||  |||||||||||    
T  25189196 tcatccaaacaatgaaattcacttcaaagtatttgaattccctcaaaacatt 25189247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 13814966 - 13815032
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    ||||||| ||| |||||||| | ||||||||||||||  ||||||||||||| |  |||||||||||    
T  13814966 atccaaataatggaattcacatcaaagtatttgaattccctcaaaacattcccctatccaaacacac 13815032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 14790200 - 14790135
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    ||||||| |||| ||||||| | ||||||||||||||  ||||||||||||| || |||||||||||    
T  14790200 atccaaataataaaattcacctcaaagtatttgaattccctcaaaacattcc-ccatccaaacacac 14790135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 19865530 - 19865592
Alignment:
Q  114 aaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    |||||||  ||||||| | ||||||||||||||| |||||||||||||  | |||||||||||    
T  19865530 aaacaatgaaattcacctcaaagtatttgaatttcctcaaaacattccctcatccaaacacac 19865592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 3905631 - 3905667
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatt 146  Q
    |||||||||||||||||||| | ||||||||||||||    
T  3905631 atccaaacaatagaattcacctcaaagtatttgaatt 3905667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 40495317 - 40495281
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatt 146  Q
    |||||||||||||||||||| | ||||||||||||||    
T  40495317 atccaaacaatagaattcacatcaaagtatttgaatt 40495281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 15270840 - 15270909
Alignment:
Q  113 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacacttaa 182  Q
    |||||||| |||||||| | ||||||||||||||  |||||||||||||||| ||||||||||| |||||    
T  15270840 caaacaatggaattcacctcaaagtatttgaattccctcaaaacattcctccatccaaacacactcttaa 15270909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 33146260 - 33146194
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    ||||||||||| |||||||| | ||||||||||||||  ||||||||||||| || |||||||||||    
T  33146260 atccaaacaatggaattcacctcaaagtatttgaattccctcaaaacattcccccatccaaacacac 33146194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 34105158 - 34105092
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    |||||||||||  ||||||  | ||||||||||||||| |||||||||||||||| |||||||||||    
T  34105158 atccaaacaatgaaattcatctcaaagtatttgaattttctcaaaacattcctccatccaaacacac 34105092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 22305181 - 22305110
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacactta 181  Q
    ||||||||||| |||||||| | |||||| |||||||  ||||||||||||| || ||||||||||| ||||    
T  22305181 atccaaacaatggaattcacctcaaagtagttgaattccctcaaaacattcccccatccaaacacactctta 22305110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 22767039 - 22766990
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    |||||||||||||||||||| | ||||||||||||||  |||||||||||    
T  22767039 atccaaacaatagaattcaccttaaagtatttgaattccctcaaaacatt 22766990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 37090368 - 37090320
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacat 158  Q
    ||||||||||| |||||||| ||||| ||||||||||| ||||||||||    
T  37090368 atccaaacaatggaattcacataaaaatatttgaatttcctcaaaacat 37090320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 25935272 - 25935322
Alignment:
Q  109 catccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    |||||||||||| |||||||| | ||||||||||||||| |||| ||||||    
T  25935272 catccaaacaatggaattcacctcaaagtatttgaatttcctcataacatt 25935322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 28490079 - 28490014
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    ||||||||||| |||||||| | ||||||||||||||  ||||||||| ||| || |||||||||||    
T  28490079 atccaaacaatggaattcacctcaaagtatttgaattccctcaaaaca-tcccccatccaaacacac 28490014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 37722876 - 37722926
Alignment:
Q  109 catccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    |||||||||||| |||||||| | ||||||||||||||  |||||||||||    
T  37722876 catccaaacaatggaattcacctcaaagtatttgaattccctcaaaacatt 37722926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 8674459 - 8674508
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    ||||||||||| |||||||||||||| || |||||||| || ||||||||    
T  8674459 atccaaacaatggaattcacttaaaattaattgaattttcttaaaacatt 8674508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 28489546 - 28489485
Alignment:
Q  114 aaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacaca 175  Q
    ||||||| |||||||| | ||||||||||||||  ||||||| ||||| || ||||||||||    
T  28489546 aaacaatggaattcacctcaaagtatttgaattctctcaaaatattcccccatccaaacaca 28489485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 41139560 - 41139511
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  41139560 atccaaacaatagaattcacctaaaagtatttgaatttcctcaaaacatt 41139511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 42776726 - 42776675
Alignment:
Q  108 tcatccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    |||||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  42776726 tcatccaaacaatgaaattcacctaaaagtatttgaatttactcaaaacatt 42776675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 42775692 - 42775626
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    ||||||||||| |||||||| | ||||||||||||||  ||||||||||||| || |||||||||||    
T  42775692 atccaaacaatggaattcacctcaaagtatttgaattccctcaaaacattcccccatccaaacacac 42775626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 53760776 - 53760842
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    |||||||||||||||||||| | ||| ||||||||||  ||||||||||||| || | |||||||||    
T  53760776 atccaaacaatagaattcacatcaaaatatttgaattccctcaaaacattcccccattcaaacacac 53760842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 29091224 - 29091175
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    |||||||||||||||||||| | ||||||||||||||  |||||||||||    
T  29091224 atccaaacaatagaattcacatcaaagtatttgaattccctcaaaacatt 29091175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 26250984 - 26251047
Alignment:
Q  113 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    |||| |||||||||||| | |||||| |||||||  ||||||||||||| || |||||||||||    
T  26250984 caaataatagaattcacctcaaagtagttgaattccctcaaaacattcccccatccaaacacac 26251047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 4441412 - 4441466
Alignment:
Q  122 gaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    |||||||| | |||||| |||||||| ||||||||||||| || |||||||||||    
T  4441412 gaattcacctcaaagtagttgaatttcctcaaaacattcccccatccaaacacac 4441466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 56339220 - 56339154
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    |||||||||||  ||||||| | ||||||||||||||  |||||||||||||  | |||||||||||    
T  56339220 atccaaacaatgaaattcacatcaaagtatttgaattccctcaaaacattccatcatccaaacacac 56339154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 16300209 - 16300254
Alignment:
Q  114 aaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    ||||||| |||||||| | ||||||||||||||| |||||||||||    
T  16300209 aaacaatggaattcacctcaaagtatttgaattttctcaaaacatt 16300254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 21012561 - 21012634
Alignment:
Q  109 catccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacacttaa 182  Q
    |||| ||||||| |||||||| | ||| ||||| ||||  |||||||||||| ||| ||||||||||| |||||    
T  21012561 catctaaacaatggaattcacctcaaaatatttaaattccctcaaaacattcgtccatccaaacacactcttaa 21012634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 26534580 - 26534531
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    ||||||||||||||||||||   ||||||||||||||  |||||||||||    
T  26534580 atccaaacaatagaattcacaacaaagtatttgaattccctcaaaacatt 26534531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 40548204 - 40548253
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    ||||||||||| ||||||||   ||||||||||||||| |||||||||||    
T  40548204 atccaaacaatggaattcaccccaaagtatttgaatttcctcaaaacatt 40548253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 108 - 181
Target Start/End: Original strand, 54761547 - 54761620
Alignment:
Q  108 tcatccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacactta 181  Q
    ||||||||||||| ||||| || | ||||||||||||||  |||||||||||||||| ||||||||||| ||||    
T  54761547 tcatccaaacaatggaatttacatcaaagtatttgaattccctcaaaacattcctccatccaaacacactctta 54761620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 55460429 - 55460363
Alignment:
Q  108 tcatccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacac 174  Q
    |||||||||| || ||||||||||| |||||||||||||  |||||||||||||| | |||||||||    
T  55460429 tcatccaaacgatggaattcacttacaagtatttgaattccctcaaaacattcctacatccaaacac 55460363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 332051 - 332119
Alignment:
Q  114 aaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacacttaa 182  Q
    |||||||||||||||| | |||||| |||||||  |||||||||||| ||| ||||||||||| |||||    
T  332051 aaacaatagaattcaccttaaagtagttgaattccctcaaaacattcttccatccaaacacactcttaa 332119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 2104821 - 2104749
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacacttaa 182  Q
    |||||||||||||||||||| | ||||||||||||||  ||| ||||||||| |  ||||||||||| |||||    
T  2104821 atccaaacaatagaattcacatcaaagtatttgaattccctcgaaacattcccctatccaaacacactcttaa 2104749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 9007440 - 9007512
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacacttaa 182  Q
    |||||||||||  ||||||| ||||||||||||||||   |||||||||||| || ||||||||||| |||||    
T  9007440 atccaaacaatgaaattcacctaaaagtatttgaattcgttcaaaacattcccccatccaaacacactcttaa 9007512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 46429480 - 46429417
Alignment:
Q  113 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    ||||||||||||||||| | |||||| |||||||  ||||||||||||| || |||||||||||    
T  46429480 caaacaatagaattcaccttaaagtagttgaattccctcaaaacattcccccatccaaacacac 46429417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 13176545 - 13176596
Alignment:
Q  108 tcatccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    |||||||||||||||||| ||| ||||||| ||||||||  |||||||||||    
T  13176545 tcatccaaacaatagaatccacctaaaagtctttgaattccctcaaaacatt 13176596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 13339446 - 13339497
Alignment:
Q  108 tcatccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    |||||||||||||||||| ||| ||||||| ||||||||  |||||||||||    
T  13339446 tcatccaaacaatagaatccacctaaaagtctttgaattctctcaaaacatt 13339497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 26323443 - 26323392
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcc 161  Q
    ||||||||||  |||||||| ||||||||||||||||  |||||||||||||    
T  26323443 atccaaacaacggaattcacctaaaagtatttgaattacctcaaaacattcc 26323392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 38506864 - 38506927
Alignment:
Q  113 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    |||||||| |||||||| | ||| ||||||||||  |||||||||||||||  |||||||||||    
T  38506864 caaacaatggaattcacctcaaattatttgaattccctcaaaacattcctctatccaaacacac 38506927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 21307517 - 21307566
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    ||||||||||| |||||||| | ||||||||||||||  |||||||||||    
T  21307517 atccaaacaatggaattcacctcaaagtatttgaattccctcaaaacatt 21307566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 47714359 - 47714290
Alignment:
Q  108 tcatccaaacaatagaattcactt-aaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    |||||||||||||  ||||||| | |||||||||||||||  |||||||||||| ||| ||||| |||||    
T  47714359 tcatccaaacaatgaaattcacatcaaaagtatttgaattccctcaaaacattcatccatccaagcacac 47714290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 20935795 - 20935728
Alignment:
Q  108 tcatccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    ||||||||||||| |||||||| | ||||||||||||||  ||||||||||||| || |||||||||||    
T  20935795 tcatccaaacaatggaattcacatcaaagtatttgaattccctcaaaacattcc-ccatccaaacacac 20935728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 44205642 - 44205710
Alignment:
Q  108 tcatccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    ||||||||| ||||||||| || ||||||||||||||||  ||||||||||| | || |||||||||||    
T  44205642 tcatccaaataatagaatttacataaaagtatttgaattccctcaaaacatttccccatccaaacacac 44205710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 14537274 - 14537337
Alignment:
Q  113 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    ||||||||||||||||| | |||||| |||||||  ||||||||||||| || |||||||||||    
T  14537274 caaacaatagaattcaccttaaagtagttgaattccctcaaaacattcccccatccaaacacac 14537337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 41585676 - 41585747
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacactta 181  Q
    |||||||||||| | ||||||| ||||||||||||||  ||||||||||| | || ||||||||||| ||||    
T  41585676 atccaaacaataaatttcacttcaaagtatttgaattccctcaaaacatttcaccatccaaacacactctta 41585747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 8736427 - 8736493
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    ||||||||||| |||||||| | ||||||||||||||  |||||||||||||  | |||||||||||    
T  8736427 atccaaacaatggaattcacctcaaagtatttgaattccctcaaaacattccctcatccaaacacac 8736493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 11684674 - 11684734
Alignment:
Q  122 gaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacacttaa 182  Q
    |||||||| | |||||| |||||||  |||||||||||||||| ||||||||||| |||||    
T  11684674 gaattcacctcaaagtagttgaattccctcaaaacattcctccatccaaacacactcttaa 11684734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 3345829 - 3345766
Alignment:
Q  113 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    |||||||||||||| || | |||||| |||||||  ||||||||||||| || |||||||||||    
T  3345829 caaacaatagaatttaccttaaagtagttgaattccctcaaaacattcccccatccaaacacac 3345766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 11824755 - 11824818
Alignment:
Q  113 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    ||||||||| ||||||| | |||||| |||||||  ||||||||||||| || |||||||||||    
T  11824755 caaacaatataattcaccttaaagtagttgaattccctcaaaacattcccccatccaaacacac 11824818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 11532238 - 11532288
Alignment:
Q  109 catccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    |||||||||||| |||||||| | ||||||||||||||  |||||||||||    
T  11532238 catccaaacaatggaattcacctcaaagtatttgaattccctcaaaacatt 11532288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 11607304 - 11607242
Alignment:
Q  114 aaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    ||||||| |||||||| | ||||||||||||||  ||||||||||| | || |||||||||||    
T  11607304 aaacaatggaattcacctcaaagtatttgaattccctcaaaacattaccccatccaaacacac 11607242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 40026148 - 40026102
Alignment:
Q  113 caaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    ||||||||||||||||| | ||||||||| ||||| |||||||||||    
T  40026148 caaacaatagaattcacctcaaagtatttaaatttcctcaaaacatt 40026102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 32839634 - 32839683
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    ||||||||||| |||||||| | ||||||||||||||  |||||||||||    
T  32839634 atccaaacaatggaattcacgtcaaagtatttgaattccctcaaaacatt 32839683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 15245526 - 15245458
Alignment:
Q  113 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacactta 181  Q
    ||||||||||||||||| | |||||| |||||||  ||||||||||||| || ||||||||||| ||||    
T  15245526 caaacaatagaattcaccttaaagtagttgaattccctcaaaacattcccccatccaaacacactctta 15245458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 44571288 - 44571225
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacac 174  Q
    ||||||||||| |||||||||| ||||||||||||||  ||||||||||||| || |||||||||    
T  44571288 atccaaacaatggaattcacttcaaagtatttgaattccctcaaaacattcc-ccatccaaacac 44571225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 32573006 - 32572943
Alignment:
Q  113 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    ||||||||||||||||| | |||||| |||||||  ||||||||||||| || |||||||||||    
T  32573006 caaacaatagaattcacctcaaagtagttgaattccctcaaaacattcccccatccaaacacac 32572943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 50471837 - 50471766
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacactta 181  Q
    |||||||||||| ||||||| | ||||||||||||||  |||||||| |||| || ||||||||||| ||||    
T  50471837 atccaaacaataaaattcacctgaaagtatttgaattccctcaaaactttcccccatccaaacacactctta 50471766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 52135609 - 52135674
Alignment:
Q  108 tcatccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaaca 173  Q
    |||||||||||||| |||| || ||||| ||||||||||  ||||||||||| |||| ||||||||    
T  52135609 tcatccaaacaataaaatttacctaaaaatatttgaattccctcaaaacatttctccatccaaaca 52135674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 37447345 - 37447409
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacac 174  Q
    ||||||||||| |||||||| | ||||||||||||||  ||||||||||||| |  |||||||||    
T  37447345 atccaaacaatggaattcacatcaaagtatttgaattctctcaaaacattcccctatccaaacac 37447409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 27935569 - 27935507
Alignment:
Q  113 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    ||||||||||||||||| | |||||| |||||||| ||||||||||| | || |||||||||||    
T  27935569 caaacaatagaattcacctgaaagtagttgaattttctcaaaacatttc-ccatccaaacacac 27935507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 23536142 - 23536204
Alignment:
Q  113 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacaca 175  Q
    ||||||||| ||||||| | |||||| |||||||  ||||||||||||| || ||||||||||    
T  23536142 caaacaatataattcaccttaaagtagttgaattccctcaaaacattcccccatccaaacaca 23536204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 26501064 - 26501114
Alignment:
Q  109 catccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    |||||||||||| |||||||| | ||||||||||||||  |||||||||||    
T  26501064 catccaaacaatggaattcacatcaaagtatttgaattccctcaaaacatt 26501114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 41822529 - 41822595
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    ||||||||||| |||||||  | ||||||||||||||  |||||||||||| | | |||||||||||    
T  41822529 atccaaacaatggaattcatcttaaagtatttgaattccctcaaaacattcattcatccaaacacac 41822595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 48953655 - 48953590
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    |||||||||||||||||||| | ||| ||||||||||   |||||||||||| || |||||||||||    
T  48953655 atccaaacaatagaattcacctcaaa-tatttgaattccttcaaaacattcccccatccaaacacac 48953590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 40264114 - 40264045
Alignment:
Q  113 caaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacacttaa 182  Q
    ||||||||||||||||  | |||||| |||||||  ||||||||||||| |  ||||||||||| |||||    
T  40264114 caaacaatagaattcatctcaaagtagttgaattccctcaaaacattcccctatccaaacacactcttaa 40264045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 47165198 - 47165247
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    ||||||||||| |||||||| | ||||||||||||||  |||||||||||    
T  47165198 atccaaacaatggaattcaccttaaagtatttgaattccctcaaaacatt 47165247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 39887214 - 39887166
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacat 158  Q
    ||||||||||| |||||||| | |||||||||||||||  |||||||||    
T  39887214 atccaaacaatggaattcacatcaaagtatttgaatttcttcaaaacat 39887166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 8475248 - 8475177
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacactta 181  Q
    ||||||||||| ||||||||  |||||||||||||||  ||||||||||| | || ||||||||||| ||||    
T  8475248 atccaaacaatggaattcacccaaaagtatttgaattccctcaaaacatttccccatccaaacacactctta 8475177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 1195416 - 1195349
Alignment:
Q  114 aaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacacactta 181  Q
    ||||||| |||||||| | |||||||||||| |  ||||||||||||| || ||||||||||| ||||    
T  1195416 aaacaatggaattcacctcaaagtatttgaaatccctcaaaacattcccccatccaaacacactctta 1195349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 776155 - 776201
Alignment:
Q  113 caaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    ||||||||||||||||| | |||||| |||||||| |||||||||||    
T  776155 caaacaatagaattcaccttaaagtagttgaatttcctcaaaacatt 776201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 109118 - 109052
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacattcctccttccaaacacac 176  Q
    ||||||||||| |||||||| | ||||||||| ||||  ||||||||||||| || |||||||||||    
T  109118 atccaaacaatggaattcacatcaaagtatttaaattccctcaaaacattcccccatccaaacacac 109052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 4162 - 4113
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    |||||||||||||||||||| | ||||||||||||||  |||||||||||    
T  4162 atccaaacaatagaattcacctcaaagtatttgaattccctcaaaacatt 4113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 130443 - 130392
Alignment:
Q  108 tcatccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    |||||||||||||||||| ||| ||||||| ||||||||  |||||||||||    
T  130443 tcatccaaacaatagaatccacctaaaagtctttgaattccctcaaaacatt 130392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 10974 - 10924
Alignment:
Q  109 catccaaacaatagaattcacttaaaagtatttgaatttactcaaaacatt 159  Q
    |||||||||||| |||||||| | ||||||||||||||  |||||||||||    
T  10974 catccaaacaatggaattcacgtcaaagtatttgaattccctcaaaacatt 10924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 9572 - 9645
Alignment:
Q  110 atccaaacaatagaattcacttaaaagtatttgaatttactc-aaaacattcctccttccaaacacacacttaa 182  Q
    ||||||||||| ||||| || | ||||||||||||||  ||| ||||||||||||| || |||||||| |||||    
T  9572 atccaaacaatggaatttacctcaaagtatttgaattctctcaaaaacattcctccatctaaacacactcttaa 9645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University