View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8760_low_6 (Length: 456)
Name: NF8760_low_6
Description: NF8760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8760_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 267 - 443
Target Start/End: Complemental strand, 4795937 - 4795761
Alignment:
| Q |
267 |
agaaaacaaatgaatatgtaacagttatattatagataaacaaacgttcctcatccccatatcttgatatcttcttatctttatctataataatcttcac |
366 |
Q |
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| T |
4795937 |
agaaaacaaataaatatgtaacagttatattatagataaacaaacgttcctcatccccatatcttgatatcttcttatctttatctataataatcttcac |
4795838 |
T |
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| Q |
367 |
aatatattcaattaaatatctgcacaatcttataaactagcaagagttcgatattagctccaacagtacaatgaaag |
443 |
Q |
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| T |
4795837 |
actatattcaattaaacatctgcacaatcttataaactagcaagagttcgatatttgctccaacagtacaatgaaag |
4795761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 47 - 244
Target Start/End: Original strand, 39634740 - 39634940
Alignment:
| Q |
47 |
ttataaaacaataaatcaattgtattaaatttccaccacgaacgc-aaaagctactcatacca-cttcgatgggaatggctttagg-tgtcaaattcaat |
143 |
Q |
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| T |
39634740 |
ttataaaacaataaatcaattgtgatgaattcccacct-gaacgccaaaagctacccgtagcagcttcgactggaatgacttttgggtgtcaaactcaat |
39634838 |
T |
|
| Q |
144 |
tttaaaaatagctatccaaacaccaa-ttttttagtaggatcacttttaggatggctagattcacgtttgcagcttcccaccgcacaaccaaacaagtac |
242 |
Q |
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| T |
39634839 |
tttaaaaatggctacccaaacaccaatttttttagcagattcacttttaggatggttaaactcacgtttgcagttccccaccgcataaccaaacgagtac |
39634938 |
T |
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| Q |
243 |
tt |
244 |
Q |
| |
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|| |
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| T |
39634939 |
tt |
39634940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 37887433 - 37887471
Alignment:
| Q |
137 |
attcaattttaaaaatagctatccaaacaccaatttttt |
175 |
Q |
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| T |
37887433 |
attcaattttaaaaatagttatccaaacaccaatttttt |
37887471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 32 - 244
Target Start/End: Original strand, 2484483 - 2484698
Alignment:
| Q |
32 |
atagagagcatccgcttataaaacaataaatcaattgtattaaatttccaccacgaacgcaaaagctactcatacca-cttcgatgggaatggctttagg |
130 |
Q |
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| T |
2484483 |
atagagagcacccagttataaaacaataaattaattgtgatgaattcccaccgtgaacacaaaagctacccatagcagcttcgactgaaatcacttttgg |
2484582 |
T |
|
| Q |
131 |
tg-tcaaattcaattttaaaaatagctatccaaacaccaatttttt-agtaggatcacttttaggatggctagattcacgtttgcagcttcccaccgcac |
228 |
Q |
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| T |
2484583 |
gggtcaaactcaattttaaaaatagctacccaaacaccaatttttttagcagattcacttttaggatggctagactcacgtttgcagttctccaccgcat |
2484682 |
T |
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| Q |
229 |
aaccaaacaagtactt |
244 |
Q |
| |
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| T |
2484683 |
aaccaaacgagtactt |
2484698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 3748268 - 3748304
Alignment:
| Q |
139 |
tcaattttaaaaatagctatccaaacaccaatttttt |
175 |
Q |
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| T |
3748268 |
tcaattttaaaaatagttacccaaacaccaatttttt |
3748304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 236
Target Start/End: Original strand, 3619701 - 3619848
Alignment:
| Q |
91 |
caaaagctactcatacca-cttcgatgggaatggcttt-aggtgtcaaattcaattttaaaaatagctatccaaacaccaattttttagtaggatcactt |
188 |
Q |
| |
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||||||||||| |||||| |||| || ||||| ||||| || || || | |||||||||||||| |||| ||||||||||||||||||| | |||||| |
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| T |
3619701 |
caaaagctactaataccagcttcaattggaattgcttttagatgccagactcaattttaaaaatggctacccaaacaccaattttttagcaaactcactt |
3619800 |
T |
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| Q |
189 |
ttaggatggctagattcacgtttgcagcttcccaccgcacaaccaaac |
236 |
Q |
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||| ||| || | |||||||| ||||| |||||| | ||||||||| |
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| T |
3619801 |
ttaagatatttaaactcacgtttacagctccccaccacgcaaccaaac |
3619848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 37699085 - 37699122
Alignment:
| Q |
139 |
tcaattttaaaaatagctatccaaacaccaatttttta |
176 |
Q |
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| T |
37699085 |
tcaattttaaaaatagttatccaaacaccaatttttta |
37699122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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