View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8760_low_8 (Length: 432)
Name: NF8760_low_8
Description: NF8760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8760_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 12 - 416
Target Start/End: Original strand, 38792576 - 38792980
Alignment:
| Q |
12 |
tgttcaaagtttaatatgataatatttcggcctccctcataaaccaacagaaacacctcaagcaggacgtgcaagannnnnnnnnnnnnnnncaaaaatg |
111 |
Q |
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| T |
38792576 |
tgttcaaagttcaatatgataatatttcggcctccctcataaaccaatagaaacacctcaagcaggacgtgcaagatttttattttatttt-caaaaatg |
38792674 |
T |
|
| Q |
112 |
ttctactaattaattaagtgtgctgcaaaaatagggttgaagcaaaattatcatagaaat-aatagcagcttcaacctttaatcaaagaaagaagaaaga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38792675 |
ttctactaattaattaagtgtgctgcaaaaatagggttgaagcaaaattatcatagaaattaatagcagcttcaacctttaatcaaagaaagaagaaaga |
38792774 |
T |
|
| Q |
211 |
aacatttatggtattagatgcatgaaacgtcttaacattcatataccattttcagaccacaagggagtagtagcagcaattttcacattaataacataaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38792775 |
aacatttatggtattagatgcatgaaacgtcttaacattcatataccattttcagatcacaagggagtagtagcagcaattttcacattaataacataaa |
38792874 |
T |
|
| Q |
311 |
caatatactcaatactcaattaacaccaaccctgtggccacctatttttaaaatccaatcttggaagccatatcttctttgaattggaacccaacgtagt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38792875 |
caatatactcaatactcaattaacaccaaccctgtggccacctatttttaaaatccaatcttggaagccatatcttctttgaattggaacccaacgtagt |
38792974 |
T |
|
| Q |
411 |
tgttct |
416 |
Q |
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|||||| |
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| T |
38792975 |
tgttct |
38792980 |
T |
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