View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8761_high_1 (Length: 888)

Name: NF8761_high_1
Description: NF8761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8761_high_1
NF8761_high_1
[»] chr5 (17 HSPs)
chr5 (19-666)||(2593125-2593771)
chr5 (681-876)||(2592849-2593044)
chr5 (334-537)||(28832871-28833074)
chr5 (341-527)||(31401071-31401257)
chr5 (341-506)||(25451871-25452036)
chr5 (334-527)||(28806794-28806987)
chr5 (334-527)||(43592943-43593136)
chr5 (334-527)||(43625737-43625930)
chr5 (334-439)||(33768949-33769054)
chr5 (342-527)||(37560673-37560858)
chr5 (337-506)||(40222136-40222305)
chr5 (334-527)||(27445655-27445848)
chr5 (464-528)||(25785375-25785439)
chr5 (31-138)||(27446028-27446136)
chr5 (31-138)||(43593326-43593434)
chr5 (31-138)||(43626120-43626228)
chr5 (343-526)||(19589116-19589303)
[»] chr8 (19 HSPs)
chr8 (334-527)||(33037005-33037198)
chr8 (334-527)||(18869742-18869935)
chr8 (334-527)||(26297205-26297398)
chr8 (334-527)||(26310462-26310655)
chr8 (334-521)||(19751607-19751794)
chr8 (334-537)||(26402397-26402600)
chr8 (341-506)||(28332009-28332174)
chr8 (334-527)||(35741211-35741404)
chr8 (51-138)||(26297587-26297675)
chr8 (51-138)||(26310844-26310932)
chr8 (342-521)||(10688344-10688523)
chr8 (342-457)||(33494364-33494479)
chr8 (341-506)||(4813128-4813293)
chr8 (341-506)||(16753162-16753327)
chr8 (31-138)||(18869444-18869552)
chr8 (334-438)||(34586886-34586990)
chr8 (341-413)||(590191-590263)
chr8 (341-413)||(25684021-25684093)
chr8 (698-744)||(13241978-13242024)
[»] chr7 (12 HSPs)
chr7 (334-527)||(18409488-18409681)
chr7 (334-506)||(24275950-24276122)
chr7 (334-521)||(21983961-21984148)
chr7 (334-527)||(20000423-20000616)
chr7 (334-527)||(12397581-12397774)
chr7 (334-527)||(21640512-21640705)
chr7 (334-537)||(9189218-9189421)
chr7 (341-506)||(3320690-3320855)
chr7 (334-527)||(16880749-16880942)
chr7 (334-527)||(24265395-24265588)
chr7 (341-506)||(25404771-25404936)
chr7 (449-506)||(30246475-30246532)
[»] chr3 (15 HSPs)
chr3 (51-527)||(1306693-1307164)
chr3 (334-537)||(6793938-6794141)
chr3 (334-527)||(22172380-22172573)
chr3 (334-537)||(3327560-3327763)
chr3 (319-537)||(4386205-4386423)
chr3 (334-527)||(8512916-8513109)
chr3 (337-506)||(10094708-10094877)
chr3 (337-506)||(10201594-10201763)
chr3 (334-527)||(32476162-32476355)
chr3 (334-527)||(2676292-2676485)
chr3 (341-506)||(47878791-47878956)
chr3 (341-506)||(54192622-54192787)
chr3 (342-506)||(10901124-10901288)
chr3 (31-138)||(22172082-22172190)
chr3 (464-537)||(37466975-37467048)
[»] chr1 (8 HSPs)
chr1 (343-537)||(47102061-47102255)
chr1 (318-527)||(47703092-47703299)
chr1 (341-506)||(9525842-9526007)
chr1 (342-527)||(19360638-19360823)
chr1 (334-439)||(41391362-41391467)
chr1 (464-528)||(4650777-4650841)
chr1 (342-386)||(13599206-13599250)
chr1 (464-521)||(13599118-13599175)
[»] chr4 (7 HSPs)
chr4 (334-521)||(16628064-16628251)
chr4 (334-527)||(18856398-18856591)
chr4 (334-527)||(9228404-9228597)
chr4 (334-521)||(3778266-3778453)
chr4 (334-437)||(6742608-6742711)
chr4 (347-521)||(5143961-5144135)
chr4 (334-416)||(3792205-3792287)
[»] chr2 (6 HSPs)
chr2 (334-521)||(39483594-39483781)
chr2 (334-527)||(19345099-19345292)
chr2 (341-506)||(22713136-22713301)
chr2 (346-506)||(31056801-31056961)
chr2 (341-506)||(2740319-2740484)
chr2 (341-506)||(39686361-39686526)
[»] scaffold0259 (1 HSPs)
scaffold0259 (334-527)||(1457-1650)
[»] scaffold0197 (2 HSPs)
scaffold0197 (334-527)||(13502-13695)
scaffold0197 (334-527)||(18381-18574)
[»] chr6 (6 HSPs)
chr6 (343-537)||(24435154-24435348)
chr6 (341-506)||(13882853-13883018)
chr6 (341-506)||(31249353-31249518)
chr6 (334-439)||(33335148-33335253)
chr6 (341-506)||(35201965-35202130)
chr6 (334-527)||(14741643-14741837)
[»] scaffold1764 (1 HSPs)
scaffold1764 (341-506)||(833-998)
[»] scaffold0078 (1 HSPs)
scaffold0078 (464-537)||(32852-32925)
[»] scaffold0006 (3 HSPs)
scaffold0006 (342-386)||(6491-6535)
scaffold0006 (342-386)||(7003-7047)
scaffold0006 (464-521)||(6403-6460)


Alignment Details
Target: chr5 (Bit Score: 554; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 19 - 666
Target Start/End: Complemental strand, 2593771 - 2593125
Alignment:
Q  19 attgaatgacgatttgaattacacaacgacaactcaagaggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaa 117  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||    
T  2593771 attgaatgacgatttgaattacacaaggacaactcaagaggaagacgccttggaggggtatgtggatgcgaactattcaggcaatttggacgataaaaaa 2593672  T
Q  118 tccttatcggattttgtgtttgttgtatttgacacgactatattagttgaaaggcaaaacaacaattcatggtggctatatatctataacttaagtgctg 217  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  2593671 tccttatcggattttgtgttttttgtatttgacacgactatattagttgaaaggcaaaacaacaattcatggtggctatat--ctataacttaagtgctg 2593574  T
Q  218 gacttttcccttgttgaaaggggtcaaggaagtcatatggttagaacatagggctggtgagttaggaatcacactcaaagatactgaagacgcattgtac 317  Q
    ||| |||||||||||||||||| ||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||    
T  2593573 gacatttcccttgttgaaagggttcaaggaagtcatatggttagaacatagaattggtgagttaggaatcacattcaaagatactgaagacgcattgtac 2593474  T
Q  318 tagccaaagtatcgtccacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatcc 417  Q
    ||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2593473 tagccaaagtaccgtccacttgacaaatcaacaagtgtaccatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatcc 2593374  T
Q  418 aaggaaattgttgttgaaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattga 517  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||    
T  2593373 aaggaaattgttgttgaaaaacatgtttcgaaagacaatccaacaaatgtgttcactaaatcatttcttagatcaaggttcaagcattgatttgaattga 2593274  T
Q  518 tcaattttgttagagagtaactcctggatggagaaaacaacaaaccagggatgataaatgagtagaaatgagagaatgttctttgagagcttttggatat 617  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2593273 tcaattttgttagagagtaactcgtggatggagaaaacaacaaaccagggatgataaatgagtagaaatgagagaatgttctttgagagcttttggatat 2593174  T
Q  618 aatttcttgtaatatatttgtattactcattttctctgctctcttacct 666  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2593173 aatttcttgtaatatatttgtatcactcattttctctgctctcttacct 2593125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 681 - 876
Target Start/End: Complemental strand, 2593044 - 2592849
Alignment:
Q  681 ctgttattggttgcctttgatatttattccacacatctaaatttattcgtgtgatatttgagttcgaagtcaaaacatcaacaactactcttgaactttg 780  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2593044 ctgttattggttgcctttgatatttatttcacacatctaaatttattcgtgtgatatttgagttcgaagtcaaaacatcaacaactactcttgaactttg 2592945  T
Q  781 ataaatgtaaagtacatttaagtgcggcttagattttataaggttgctagatcatttgatacattgtgatgtgagttcgaacctgcaattcttctc 876  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||    
T  2592944 ataaatttaaagtacatttaagtgcggcttagattttataaggttgctagattatttgatacattgtgatgtaagttcgaacctacaattcttctc 2592849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 334 - 537
Target Start/End: Complemental strand, 28833074 - 28832871
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| | |||||||||||||||||||||||||| || |||||||| ||||| || || |||||  ||||| |||||||||| || || ||||| || |    
T  28833074 cacttggcgaatcatcaagtgtatcatgagaggacaaagcacattgacattcgcttgcactttgttcgagacatgattgaatcaaaagagattgtggtgg 28832975  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagaga 533  Q
    ||||||  |  ||| |||| ||||   |  ||||||| ||||| ||| | | ||||||||||||||||||||| || || |||||||| ||||||  |||    
T  28832974 aaaaagtggcatcggaagagaatctggcggatgtgtttaccaattcattgcctagatcaaggttcaagcattgcttggacttgatcaagtttgttgaaga 28832875  T
Q  534 gtaa 537  Q
    ||||    
T  28832874 gtaa 28832871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 341 - 527
Target Start/End: Original strand, 31401071 - 31401257
Alignment:
Q  341 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 440  Q
    |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||| ||||     
T  31401071 caaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttgagaaagt 31401170  T
Q  441 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
     |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || ||||||||||||||    
T  31401171 ggcatcggaggaaaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaattttgt 31401257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 341 - 506
Target Start/End: Original strand, 25451871 - 25452036
Alignment:
Q  341 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 440  Q
    |||||||||| || |||||||| ||||| ||||||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  25451871 caaatcatcaggtatatcatgaaaggacaaaacacattgacattcgtttgcacttcgtcagagacatgattgagacaaaggagatcatggtagagaaagt 25451970  T
Q  441 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  ||||||||||||||||||||    
T  25451971 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaaggttcaagcattg 25452036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 334 - 527
Target Start/End: Original strand, 28806794 - 28806987
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||| | ||| |||||||| |||| || || || ||||    
T  28806794 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgtcagtgacatgattgaaaccaaagagatcgtggttg 28806893  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    ||||||  |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  28806894 aaaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaagtttgt 28806987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 334 - 527
Target Start/End: Complemental strand, 43593136 - 43592943
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||| ||||| || ||||| || |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  43593136 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacatcgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 43593037  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | ||||||||| ||||||||||| || || |||||||| |||||    
T  43593036 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctagatcaagattcaagcattgcttggacttgatcaagtttgt 43592943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 334 - 527
Target Start/End: Complemental strand, 43625930 - 43625737
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||| ||||| || ||||| || |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  43625930 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacatcgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 43625831  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | ||||||||| ||||||||||| || || |||||||| |||||    
T  43625830 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctagatcaagattcaagcattgcttggacttgatcaagtttgt 43625737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 334 - 439
Target Start/End: Complemental strand, 33769054 - 33768949
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||| ||||| |||||||| | || || ||||| ||||    
T  33769054 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgtcagagacatgattgaaacaaaagagattgtggttg 33768955  T
Q  434 aaaaag 439  Q
    | ||||    
T  33768954 agaaag 33768949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 342 - 527
Target Start/End: Original strand, 37560673 - 37560858
Alignment:
Q  342 aaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaagat 441  Q
    ||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||| ||||| |||||||| | || || ||||| ||||| ||||      
T  37560673 aaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgtcagagacatgattgaaacaaaagagattgtggttgagaaagtg 37560772  T
Q  442 gtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  37560773 gcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaagtttgt 37560858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 337 - 506
Target Start/End: Original strand, 40222136 - 40222305
Alignment:
Q  337 ttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaa 436  Q
    |||||||||||||| || |||||||| || || ||||||||||| |||||||| ||||| ||| ||||| |||||||  | ||||| ||  | || || |    
T  40222136 ttgacaaatcatcaggtatatcatgaaagaacaaaacacattgacattcgtttgcatttcgtcagagacatgattgagacaaaggagatcatggtggaga 40222235  T
Q  437 aagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
    |||  |   || |||| |||||| || |  |||||||||||||| |||  ||||||||||||||||||||    
T  40222236 aagtggcaacggaagaaaatccagcagacatgttcaccaaatcattaccaagatcaaggttcaagcattg 40222305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 527
Target Start/End: Complemental strand, 27445848 - 27445655
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| ||| |||||||||||||||||| ||||| || ||||| || |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  27445848 cacttggcaattcatcaagtgtatcatgaaaggacaaagcacatcgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 27445749  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    | ||||  |  ||| | || |||||  |  |||||||| |||| ||| | | ||||||||| ||||||||||| || || |||||||| |||||    
T  27445748 agaaagtggcatcggaggagaatccggcggatgtgttccccaagtcattgcctagatcaagattcaagcattgcttggacttgatcaagtttgt 27445655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 464 - 528
Target Start/End: Complemental strand, 25785439 - 25785375
Alignment:
Q  464 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgtt 528  Q
    |||| |||||||||||| ||| ||||||||||||||| || || ||||| |||||||| ||||||    
T  25785439 atgtattcaccaaatcattacctagatcaaggttcaatcaatgttttgacttgatcaaatttgtt 25785375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 27446136 - 27446028
Alignment:
Q  31 tttgaattacacaacgacaactcaagaggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggat 129  Q
    |||||| ||||||| | || ||||||| |||||||| ||| || ||||||| |||||| | ||| | |||||| |||||  || |||||||||||||| |    
T  27446136 tttgaagtacacaagggcagctcaagatgaagacgctttggaggggtatgttgatgcggattatgctggcaatgtggacactagaaaatccttatcgggt 27446037  T
Q  130 tttgtgttt 138  Q
    |||||||||    
T  27446036 tttgtgttt 27446028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 43593434 - 43593326
Alignment:
Q  31 tttgaattacacaacgacaactcaagaggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggat 129  Q
    |||||| ||||||| | || ||||||| |||||||| ||| || ||||||| |||||| | ||| | |||||| |||||  || |||||||||||||| |    
T  43593434 tttgaagtacacaagggcagctcaagatgaagacgctttggaggggtatgttgatgcggattatgcgggcaatgtggacactagaaaatccttatcgggt 43593335  T
Q  130 tttgtgttt 138  Q
    |||||||||    
T  43593334 tttgtgttt 43593326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 43626228 - 43626120
Alignment:
Q  31 tttgaattacacaacgacaactcaagaggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggat 129  Q
    |||||| ||||||| | || ||||||| |||||||| ||| || ||||||| |||||| | ||| | |||||| |||||  || |||||||||||||| |    
T  43626228 tttgaagtacacaagggcagctcaagatgaagacgctttggaggggtatgttgatgcggattatgcgggcaatgtggacactagaaaatccttatcgggt 43626129  T
Q  130 tttgtgttt 138  Q
    |||||||||    
T  43626128 tttgtgttt 43626120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 343 - 526
Target Start/End: Complemental strand, 19589303 - 19589116
Alignment:
Q  343 aatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgt----tgttgaaaaa 438  Q
    ||||||||||||||||||||| |||| || |||||||| ||||  || || |||||  ||||| |||||||||| || || |||||     || ||||||    
T  19589303 aatcatcaagtgtatcatgaggggactaagcacattgacattcacttgcactttgttagagacatgattgaatcaaaagagattgtggtgcgtggaaaaa 19589204  T
Q  439 gatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttg 526  Q
    |  |  | |||||| |||||  |  ||||||| ||||| ||| | | ||||||||||||||||||||| || || |||||||| ||||    
T  19589203 gtggcattgaaagagaatccggcggatgtgtttaccaagtcatttcctagatcaaggttcaagcattgcttggacttgatcaagtttg 19589116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 1e-28; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 334 - 527
Target Start/End: Original strand, 33037005 - 33037198
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||||||||| || |||||||| ||||| || || |||||  ||||| |||||||||| || || ||||| ||||    
T  33037005 cacttggcaaatcatcaagtgtatcatgagaggacaaagcacattgacattcgcttgcactttgttagagacatgattgaatcaaaagagattgtggttg 33037104  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    ||||||  |  ||| |||| |||||  |  ||||||||||||| ||| ||| ||||||||| ||||||||||| || || |||||||| |||||    
T  33037105 aaaaagtggcatcggaagagaatccggcggatgtgttcaccaagtcattacctagatcaagattcaagcattgcttggacttgatcaaatttgt 33037198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 334 - 527
Target Start/End: Original strand, 18869742 - 18869935
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||||||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  18869742 cacttggcaaatcatcaagtgtatcatgagaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 18869841  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| ||| ||||||||| ||||||||||| || || |||||||| |||||    
T  18869842 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattacctagatcaagattcaagcattgcttggacttgatcaaatttgt 18869935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 334 - 527
Target Start/End: Complemental strand, 26297398 - 26297205
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||||||||| || |||||||| ||||| || || |||||  ||||| |||||||||| || || ||||| ||||    
T  26297398 cacttggcaaatcatcaagtgtatcatgagaggacaaagcacattgacattcgcttgcactttgttagagacatgattgaatcaaaagagattgtggttg 26297299  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    | ||||  |  ||| |||| |||||  |  ||||||||||||| ||| | | ||||||||| ||||| ||||| || || |||||||| |||||    
T  26297298 agaaagtggcatcggaagagaatccggcggatgtgttcaccaagtcattgcctagatcaagattcaaacattgcttggacttgatcaagtttgt 26297205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 334 - 527
Target Start/End: Complemental strand, 26310655 - 26310462
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||||||||| || |||||||| ||||| || || |||||  ||||| |||||||||| || || ||||| ||||    
T  26310655 cacttggcaaatcatcaagtgtatcatgagaggacaaagcacattgacattcgcttgcactttgttagagacatgattgaatcaaaagagattgtggttg 26310556  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    | ||||  |  ||| |||| |||||  |  ||||||||||||| ||| | | ||||||||| ||||| ||||| || || |||||||| |||||    
T  26310555 agaaagtggcatcggaagagaatccggcggatgtgttcaccaagtcattgcctagatcaagattcaaacattgcttggacttgatcaagtttgt 26310462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 334 - 521
Target Start/End: Original strand, 19751607 - 19751794
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| ||||||||||||||||||||||||| || || |||||||| ||||| || || |||||  ||||| |||||||||| |  || ||| | || |    
T  19751607 cacttggcaaatcatcaagtgtatcatgagagcacaaagcacattgacattcgcttgcactttgttagagacatgattgaatcaagagagattatggtgg 19751706  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 521  Q
    ||||||  |  ||| |||| |||||  |  ||||||| ||||| ||| ||| ||||||||||||||||||||| || || ||||||||    
T  19751707 aaaaagtggcatcggaagagaatccggcggatgtgtttaccaagtcattacctagatcaaggttcaagcattgcttggacttgatcaa 19751794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 334 - 537
Target Start/End: Original strand, 26402397 - 26402600
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| | ||||||||| |||||||||||||||| || |||||||| ||||| || || |||||  ||||| |||||||||| || | |||||| || |    
T  26402397 cacttggcgaatcatcaaatgtatcatgagaggacaaagcacattgacattcgcttgcactttgttagagacatgattgaatcaaaagtaattgtggtgg 26402496  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagaga 533  Q
    ||||||  |  |||||||| ||||   |  ||||||| ||||| ||| | | |||||||||||||||| |||| || || |||||||| ||||||  |||    
T  26402497 aaaaagtggcatcgaaagagaatctggcggatgtgtttaccaagtcattgcctagatcaaggttcaagtattgcttggacttgatcaagtttgttgaaga 26402596  T
Q  534 gtaa 537  Q
    ||||    
T  26402597 gtaa 26402600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 341 - 506
Target Start/End: Original strand, 28332009 - 28332174
Alignment:
Q  341 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 440  Q
    |||||||||| ||||||||||||||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  28332009 caaatcatcaggtgtatcatgagaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagagaaagt 28332108  T
Q  441 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  28332109 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 28332174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 334 - 527
Target Start/End: Complemental strand, 35741404 - 35741211
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||| ||||| |||||||| | || || ||||| ||||    
T  35741404 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgtcagagacatgattgaaacaaaagagattgtggttg 35741305  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  35741304 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaagtttgt 35741211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 26297675 - 26297587
Alignment:
Q  51 ctcaagaggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggattttgtgttt 138  Q
    |||||||||||||||| ||| || ||||||| |||||||||||| | |||||| |||||  || |||||||||||||| ||||||||||    
T  26297675 ctcaagaggaagacgctttggaggggtatgttgatgcgaactatgcgggcaatgtggacactagaaaatccttatcgggttttgtgttt 26297587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 26310932 - 26310844
Alignment:
Q  51 ctcaagaggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggattttgtgttt 138  Q
    |||||||||||||||| ||| || ||||||| |||||||||||| | |||||| |||||  || |||||||||||||| ||||||||||    
T  26310932 ctcaagaggaagacgctttggaggggtatgttgatgcgaactatgcgggcaatgtggacactagaaaatccttatcgggttttgtgttt 26310844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 342 - 521
Target Start/End: Original strand, 10688344 - 10688523
Alignment:
Q  342 aaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaagat 441  Q
    ||||||||||||||||||||| ||||| || ||||| || ||| |  | || |||||  ||||| |||||||||| || || ||||| ||| ||||||      
T  10688344 aaatcatcaagtgtatcatgaaaggacaaagcacatagacattagactgcactttgttagagacatgattgaatcaaaagagattgtggttaaaaaagtg 10688443  T
Q  442 gtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 521  Q
    |  ||| | || ||||||||  ||||||||||||| ||| ||| || |||||| ||||||||||| || || ||||||||    
T  10688444 gcatcggaggagaatccaacggatgtgttcaccaagtcattacctaaatcaagattcaagcattgcttggacttgatcaa 10688523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 342 - 457
Target Start/End: Original strand, 33494364 - 33494479
Alignment:
Q  342 aaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaagat 441  Q
    ||||||||||||||||||| ||||||| || |||||||| |||||||| || ||| |  ||||| ||||||| || || |||||||| | |||||||| |    
T  33494364 aaatcatcaagtgtatcattagaggacaaagcacattgacattcgtttgcactttattagagacatgattgagtcaaaagaaattgtggctgaaaaagtt 33494463  T
Q  442 gtttcgaaagacaatc 457  Q
    | ||| ||||| ||||    
T  33494464 gcttcaaaagagaatc 33494479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 341 - 506
Target Start/End: Complemental strand, 4813293 - 4813128
Alignment:
Q  341 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 440  Q
    |||||||||| ||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  4813293 caaatcatcaggtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagagaaagt 4813194  T
Q  441 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  4813193 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 4813128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 341 - 506
Target Start/End: Complemental strand, 16753327 - 16753162
Alignment:
Q  341 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 440  Q
    |||||||||| ||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  16753327 caaatcatcaggtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagagaaagt 16753228  T
Q  441 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  16753227 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 16753162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 18869444 - 18869552
Alignment:
Q  31 tttgaattacacaacgacaactcaagaggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggat 129  Q
    |||||| ||||||| | || ||||||| |||||||| ||| || ||||||| |||||| ||||| | |||||| |||||  || |||||||||||||| |    
T  18869444 tttgaagtacacaagggcagctcaagatgaagacgcattggaggggtatgttgatgcggactatgcgggcaatgtggacactagaaaatccttatcgggt 18869543  T
Q  130 tttgtgttt 138  Q
    |||||||||    
T  18869544 tttgtgttt 18869552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 334 - 438
Target Start/End: Complemental strand, 34586990 - 34586886
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| | |||||||||||||||||||||||||| || |||||||| ||||| || || ||| |  ||||| |||||||||| || || ||||| || |    
T  34586990 cacttggcgaatcatcaagtgtatcatgagaggactaagcacattgacattcgcttgcactttattagagacatgattgaatcaaaagagattgtggtgg 34586891  T
Q  434 aaaaa 438  Q
    |||||    
T  34586890 aaaaa 34586886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 341 - 413
Target Start/End: Original strand, 590191 - 590263
Alignment:
Q  341 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattga 413  Q
    |||||||||| || |||||||| ||||| ||||||||||| |||||||| || || ||| ||||| |||||||    
T  590191 caaatcatcaggtatatcatgaaaggacaaaacacattgacattcgtttgcacttcgtcagagacatgattga 590263  T

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Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 341 - 413
Target Start/End: Original strand, 25684021 - 25684093
Alignment:
Q  341 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattga 413  Q
    |||||||||| ||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||    
T  25684021 caaatcatcaggtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattga 25684093  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 698 - 744
Target Start/End: Complemental strand, 13242024 - 13241978
Alignment:
Q  698 tgatatttattccacacatctaaatttattcgtgtgatatttgagtt 744  Q
    ||||| ||||||||||||||||| ||| || ||||||||||||||||    
T  13242024 tgatacttattccacacatctaagttttttagtgtgatatttgagtt 13241978  T

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Target: chr7 (Bit Score: 66; Significance: 1e-28; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 334 - 527
Target Start/End: Complemental strand, 18409681 - 18409488
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||||||||| || |||||||| ||||| || || |||||| ||||| |||||||||| || || ||||| ||||    
T  18409681 cacttggcaaatcatcaagtgtatcatgagaggacaaagcacattgacattcgcttgcactttgtcagagacatgattgaatcaaaagagattgtggttg 18409582  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    |||| |  |  ||| |||| |||||  | |||||||||||||| | | | | ||||||||||||||||||||| || || |||||||| |||||    
T  18409581 aaaaggtggcatcggaagagaatccggcgaatgtgttcaccaagttattgcctagatcaaggttcaagcattgcttggacttgatcaagtttgt 18409488  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 334 - 506
Target Start/End: Original strand, 24275950 - 24276122
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||||||||| ||  ||||||| ||||| || || |||||  ||||| |||||||||| || || ||||| || |    
T  24275950 cacttggcaaatcatcaagtgtatcatgagaggacaaaggacattgacattcgcttgcactttgtaagagacatgattgaatcaaaagagattgtggtgg 24276049  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
    ||||||  |  ||| |||| ||||| ||  ||||||| ||||| ||| ||| |||||||||||||||||||||    
T  24276050 aaaaagtggcatcggaagagaatccgacggatgtgtttaccaagtcattacctagatcaaggttcaagcattg 24276122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 334 - 521
Target Start/End: Complemental strand, 21984148 - 21983961
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| | |||||||||||||||||||||||||| || |||||||| ||||| || || |||||  ||||| |||||||||| || || || || || |    
T  21984148 cacttggcgaatcatcaagtgtatcatgagaggacaaagcacattgacattcgcttgcactttgtaagagacatgattgaatcaaaagagatcgtggtgg 21984049  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 521  Q
    |||||   |  ||| |||| |||||| || ||||||| ||||| ||| | | ||||||||||||||||||||| || || ||||||||    
T  21984048 aaaaaatggcatcggaagagaatccagcagatgtgtttaccaagtcattgcctagatcaaggttcaagcattgcttggacttgatcaa 21983961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 334 - 527
Target Start/End: Complemental strand, 20000616 - 20000423
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||| | || |||||  ||||| |||||||||| || || ||||| ||||    
T  20000616 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgtctgcactttgttagagacatgattgaatcaaaagagattgtggttg 20000517  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    | ||||  |  ||| | || |||||| |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  20000516 agaaagtggcatcggaggagaatccagcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaagtttgt 20000423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 334 - 527
Target Start/End: Complemental strand, 12397774 - 12397581
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  12397774 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 12397675  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | ||||||||| ||||||||||| || || |||||||| |||||    
T  12397674 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctagatcaagattcaagcattgcttggacttgatcaagtttgt 12397581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 334 - 527
Target Start/End: Complemental strand, 21640705 - 21640512
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  21640705 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 21640606  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | ||||||||| ||||||||||| || || |||||||| |||||    
T  21640605 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctagatcaagattcaagcattgcttggacttgatcaaatttgt 21640512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 334 - 537
Target Start/End: Original strand, 9189218 - 9189421
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||||||||| || |||||||| ||||| || || |||||  ||||| |||||||||| |  || ||| | || |    
T  9189218 cacttggcaaatcatcaagtgtatcatgagaggacaaagcacattgacattcgcttgcactttgttagagacatgattgaatcgagagagattatggtgg 9189317  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagaga 533  Q
    ||||||  |  ||| |||| ||||   |  ||||||| ||||| ||| | | ||||||||||||||||||||| ||  | |||||||| ||||||  |||    
T  9189318 aaaaagtggcatcggaagagaatctggcggatgtgtttaccaagtcattgcctagatcaaggttcaagcattgcttgaacttgatcaagtttgttgaaga 9189417  T
Q  534 gtaa 537  Q
    ||||    
T  9189418 gtaa 9189421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 341 - 506
Target Start/End: Complemental strand, 3320855 - 3320690
Alignment:
Q  341 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 440  Q
    |||||||||||||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  3320855 caaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagagaaagt 3320756  T
Q  441 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  3320755 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 3320690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 334 - 527
Target Start/End: Complemental strand, 16880942 - 16880749
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  16880942 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 16880843  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  16880842 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaagtttgt 16880749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 334 - 527
Target Start/End: Original strand, 24265395 - 24265588
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  24265395 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 24265494  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  24265495 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaagtttgt 24265588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 341 - 506
Target Start/End: Original strand, 25404771 - 25404936
Alignment:
Q  341 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 440  Q
    |||||||||| ||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  25404771 caaatcatcaggtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagagaaagt 25404870  T
Q  441 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  25404871 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 25404936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 449 - 506
Target Start/End: Original strand, 30246475 - 30246532
Alignment:
Q  449 aagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
    ||||||||||| || |  |||||||||||||| |||  ||||||||||||||||||||    
T  30246475 aagacaatccagcagacatgttcaccaaatcattaccaagatcaaggttcaagcattg 30246532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 4e-28; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 51 - 527
Target Start/End: Complemental strand, 1307164 - 1306693
Alignment:
Q  51 ctcaagaggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggattttgtgtttgttgtatttga 149  Q
    |||||||||||||||| ||| || ||||||| |||||| ||||| | |||||| |||||  || |||||||||||||| ||||||||||  | | | ||     
T  1307164 ctcaagaggaagacgctttggaggggtatgttgatgcggactatgcgggcaatgtggacactagaaaatccttatcgggttttgtgtttactctttatgg 1307065  T
Q  150 cacgactatattagttgaaaggcaaaacaacaattcatggtggctatatatctataacttaagtgctggacttttcccttgttgaaaggggtcaaggaag 249  Q
    |||||||||  |||||| |||||||| ||||||||| |||| || || ||||||  ||| ||| |  | || || ||||||||||| ||||| || || |    
T  1307064 cacgactat--tagttggaaggcaaatcaacaattcgtggttgc-at-tatctaccactcaagcggagtacattgcccttgttgaa-ggggtgaaagagg 1306970  T
Q  250 tcatatggttagaacatagggctggtgagttaggaatcacactcaaagatac-tgaagacgcattgtactagccaaagtatcgtccacttgacaaatcat 348  Q
     |||||||||  || | | |  ||||||||||||||| ||  ||||  ||   ||||||  ||||||  ||| ||||||  | | |||||| ||||||||    
T  1306969 ccatatggttgaaagagatgattggtgagttaggaattac--tcaagaatgtgtgaagatacattgtgatagtcaaagtgccattcacttggcaaatcat 1306872  T
Q  349 caagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaagatgtttcga 448  Q
    |||||||||||||||||||| || |||||||| ||||| || || |||||  ||||| |||||||||| || || ||||| |||||||| |  |  |||     
T  1306871 caagtgtatcatgagaggacaaagcacattgacattcgcttgcactttgttagagacatgattgaatcaaaagagattgtggttgaaaaggtggcatcgg 1306772  T
Q  449 aagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    |||| |||||  |  ||||||||||||| ||| | | ||||||||||||||||||||| || || |||||||| |||||    
T  1306771 aagagaatccggcggatgtgttcaccaagtcattgcctagatcaaggttcaagcattgcttggacttgatcaagtttgt 1306693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 334 - 537
Target Start/End: Original strand, 6793938 - 6794141
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| | |||||| ||||||||||||||||||| || |||||||| ||||| || || |||||  ||||| |||||||||| || || ||||| || |    
T  6793938 cacttggcgaatcataaagtgtatcatgagaggacaaagcacattgacattcgcttgcactttgttagagacatgattgaatcaaaagagattgtggtgg 6794037  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagaga 533  Q
    ||||||  |  ||| |||| |||||  | |||||||| ||||| ||| | | ||||||||||||||||||||| || || |||||||| ||||||  |||    
T  6794038 aaaaagtggcatcggaagagaatccggcgaatgtgtttaccaagtcattgcctagatcaaggttcaagcattgcttggacttgatcaagtttgttgaaga 6794137  T
Q  534 gtaa 537  Q
    ||||    
T  6794138 gtaa 6794141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 334 - 527
Target Start/End: Original strand, 22172380 - 22172573
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  22172380 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 22172479  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    ||||||  |  ||| | || |||||  |  ||||||||||||| ||| | | ||||||||| ||||||||||| || || |||||||| |||||    
T  22172480 aaaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctagatcaagattcaagcattgcttggacttgatcaagtttgt 22172573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 334 - 537
Target Start/End: Original strand, 3327560 - 3327763
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||||||||| || |||||| | |||   || || |||||  ||||| |||||||||| || || ||||| || |    
T  3327560 cacttggcaaatcatcaagtgtatcatgagaggactaagcacattcacattttcttgcactttgttagagacatgattgaatcaaaagagattgtggtag 3327659  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagaga 533  Q
    ||||||  |  ||| |||| |||||  |  ||||||| ||||| | | ||| ||||||||| ||||||||||| || || |||||||| ||||||  |||    
T  3327660 aaaaagtggcatcggaagagaatccggcggatgtgttaaccaagtaattacctagatcaagattcaagcattgcttggacttgatcaagtttgttgaaga 3327759  T
Q  534 gtaa 537  Q
    ||||    
T  3327760 gtaa 3327763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 319 - 537
Target Start/End: Original strand, 4386205 - 4386423
Alignment:
Q  319 agccaaagtatcgtccacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatcca 418  Q
    |||||||||  | |||||||| | |||||||||||||||||| ||||||  || | |||||| ||||| || || |||||   |||| |||||||||| |    
T  4386205 agccaaagtgccatccacttggcgaatcatcaagtgtatcattagaggataaagcccattgacattcgcttgcactttgtgaaagacatgattgaatcga 4386304  T
Q  419 aggaaattgttgttgaaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgat 518  Q
    | || ||||| || || |||| ||  |||||||| ||||   |  |||||||||| || ||| ||| |||||||||||||||| |||| || || ||| |    
T  4386305 aagagattgtggtggagaaagttgcatcgaaagagaatctggcggatgtgttcactaagtcattacctagatcaaggttcaagaattgcttggacttggt 4386404  T
Q  519 caattttgttagagagtaa 537  Q
    ||||||||||  |||||||    
T  4386405 caattttgttgaagagtaa 4386423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 334 - 527
Target Start/End: Complemental strand, 8513109 - 8512916
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  8513109 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 8513010  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  8513009 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaagtttgt 8512916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 337 - 506
Target Start/End: Complemental strand, 10094877 - 10094708
Alignment:
Q  337 ttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaa 436  Q
    |||||||||||||| ||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || |    
T  10094877 ttgacaaatcatcaggtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagaga 10094778  T
Q  437 aagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
    |||  |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  10094777 aagtggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 10094708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 337 - 506
Target Start/End: Complemental strand, 10201763 - 10201594
Alignment:
Q  337 ttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaa 436  Q
    |||||||||||||| ||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || |    
T  10201763 ttgacaaatcatcaggtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagaga 10201664  T
Q  437 aagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
    |||  |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  10201663 aagtggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 10201594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 334 - 527
Target Start/End: Complemental strand, 32476355 - 32476162
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  32476355 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 32476256  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  32476255 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaagtttgt 32476162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 334 - 527
Target Start/End: Original strand, 2676292 - 2676485
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||| | || || ||||| ||||    
T  2676292 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaaacaaaagagattgtggttg 2676391  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  2676392 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaagtttgt 2676485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 341 - 506
Target Start/End: Complemental strand, 47878956 - 47878791
Alignment:
Q  341 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 440  Q
    |||||||||| || |||||||| ||||| ||||||||||| |||||||| || || ||  ||||| |||||||  | ||||| ||  | || || ||||     
T  47878956 caaatcatcaggtatatcatgaaaggacaaaacacattgacattcgtttgcacttcgtaagagacatgattgagacaaaggagatcatggtagagaaagt 47878857  T
Q  441 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  ||||||||||||||||||||    
T  47878856 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaaggttcaagcattg 47878791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 341 - 506
Target Start/End: Original strand, 54192622 - 54192787
Alignment:
Q  341 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 440  Q
    |||||||||| || |||||||| ||||| ||||||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  |  | || ||||     
T  54192622 caaatcatcaggtatatcatgaaaggacaaaacacattgacattcgtttgcacttcgtcagagacatgattgagacaaaggagatcatgatagagaaagt 54192721  T
Q  441 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  ||||||||||||||||||||    
T  54192722 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaaggttcaagcattg 54192787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 342 - 506
Target Start/End: Original strand, 10901124 - 10901288
Alignment:
Q  342 aaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaagat 441  Q
    ||||||||| || |||||||| ||||| ||||||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||      
T  10901124 aaatcatcaggtatatcatgaaaggacaaaacacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagagaaagtg 10901223  T
Q  442 gtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
    |  ||| |||| |||||| || |  |||||||||||||| |||  ||||||||||||||||||||    
T  10901224 gcatcggaagaaaatccagcagacatgttcaccaaatcattaccaagatcaaggttcaagcattg 10901288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 22172082 - 22172190
Alignment:
Q  31 tttgaattacacaacgacaactcaagaggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggat 129  Q
    |||||| ||||||| | || ||||||| |||||||| ||| || ||||||| |||||| | ||| |||||||  |||||  || |||||||||||||| |    
T  22172082 tttgaagtacacaagggcagctcaagatgaagacgctttggaggggtatgttgatgcggattatgcaggcaacgtggacactagaaaatccttatcgggt 22172181  T
Q  130 tttgtgttt 138  Q
    |||||||||    
T  22172182 tttgtgttt 22172190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 464 - 537
Target Start/End: Complemental strand, 37467048 - 37466975
Alignment:
Q  464 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagagagtaa 537  Q
    ||||||| ||||| ||| |||  |||||||||||||||||||| || || |||||||| ||||||  |||||||    
T  37467048 atgtgtttaccaagtcattaccgagatcaaggttcaagcattgtttggacttgatcaaatttgttgaagagtaa 37466975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 4e-22; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 343 - 537
Target Start/End: Original strand, 47102061 - 47102255
Alignment:
Q  343 aatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaagatg 442  Q
    |||||||||||||||||||||||||| || |||||||| ||||| || || |||||  ||||| |||||||||| || || ||||| || |||||||  |    
T  47102061 aatcatcaagtgtatcatgagaggacaaagcacattgacattcgcttacactttgttagagacatgattgaatcaaaagagattgtggtggaaaaagtgg 47102160  T
Q  443 tttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagagagtaa 537  Q
      ||| |||| ||||   | |||||||| ||||| ||| | | ||||||||||||||||||||| || || |||||||| ||||||  |||||||    
T  47102161 catcggaagagaatcaggcgaatgtgtttaccaagtcattgcctagatcaaggttcaagcattgcttggacttgatcaagtttgttgaagagtaa 47102255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 318 - 527
Target Start/End: Original strand, 47703092 - 47703299
Alignment:
Q  318 tagccaaagtatcgtccacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatcc 417  Q
    |||||||||| || | |||||| | |||||||||||||||||||||||||| || |||||||| ||||| || || |||||  ||||| ||||||||||     
T  47703092 tagccaaagtgtcattcacttggcgaatcatcaagtgtatcatgagaggactaagcacattgacattcgcttgcactttgttagagacatgattgaatca 47703191  T
Q  418 aaggaaattgttgttgaaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattga 517  Q
    || || ||||| || |||||||  |  ||| |||| |||||  |  ||||||| ||||| ||| | | || |||||||||||||||||| || || ||||    
T  47703192 aaagagattgtggtggaaaaag--gcatcggaagagaatccggcggatgtgtttaccaagtcattgcctaaatcaaggttcaagcattgtttggacttga 47703289  T
Q  518 tcaattttgt 527  Q
    |||| |||||    
T  47703290 tcaagtttgt 47703299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 341 - 506
Target Start/End: Original strand, 9525842 - 9526007
Alignment:
Q  341 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 440  Q
    |||||||||||||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  9525842 caaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagagaaagt 9525941  T
Q  441 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  9525942 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 9526007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 342 - 527
Target Start/End: Original strand, 19360638 - 19360823
Alignment:
Q  342 aaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaagat 441  Q
    ||||||||| ||||||||||||||||| || |||||||| ||||  || || |||||  ||||| |||||||||| || || ||||| ||||| ||||      
T  19360638 aaatcatcacgtgtatcatgagaggacaaagcacattgacattcccttgcactttgttagagacatgattgaatcaaaagagattgtggttgataaagtg 19360737  T
Q  442 gtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    |  ||| | || |||||  |  ||||||||||||| ||| | | ||||||||| ||||| ||||| || || |||||||| |||||    
T  19360738 gcatcggatgataatccggcggatgtgttcaccaagtcattgcctagatcaagtttcaatcattgcttggacttgatcaagtttgt 19360823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 334 - 439
Target Start/End: Complemental strand, 41391467 - 41391362
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  41391467 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 41391368  T
Q  434 aaaaag 439  Q
    | ||||    
T  41391367 agaaag 41391362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 464 - 528
Target Start/End: Complemental strand, 4650841 - 4650777
Alignment:
Q  464 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgtt 528  Q
    ||||||||| ||||||| | ||||||||||||||||| ||||| || || |||||||||||||||    
T  4650841 atgtgttcatcaaatcattgcttagatcaaggttcaaacattgtttggacttgatcaattttgtt 4650777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 13599250 - 13599206
Alignment:
Q  342 aaatcatcaagtgtatcatgagaggaccaaacacattgatattcg 386  Q
    ||||||||||||||||||||||||||| || |||||||| |||||    
T  13599250 aaatcatcaagtgtatcatgagaggacaaagcacattgacattcg 13599206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 464 - 521
Target Start/End: Complemental strand, 13599175 - 13599118
Alignment:
Q  464 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 521  Q
    ||||||| ||||| ||| | ||||||||||||||||||||||| || || ||||||||    
T  13599175 atgtgtttaccaagtcattgcttagatcaaggttcaagcattgcttggacttgatcaa 13599118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 334 - 521
Target Start/End: Original strand, 16628064 - 16628251
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||||||||| || |||||||| ||||  || || |||||  ||||| |||||||||| || || ||||| || |    
T  16628064 cacttggcaaatcatcaagtgtatcatgagaggacaaagcacattgacattcacttgcactttgttagagacatgattgaatcaaaagatattgtggtgg 16628163  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 521  Q
    ||||||  |  ||| |||| ||||   |  ||||||| ||||| ||| ||| ||||||||||||||||||||| || || ||||||||    
T  16628164 aaaaagtggcatcggaagagaatctggcggatgtgtttaccaagtcattacctagatcaaggttcaagcattgcttggacttgatcaa 16628251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 334 - 527
Target Start/End: Complemental strand, 18856591 - 18856398
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||| | || |||||  ||||| |||||||||| || || ||||| ||||    
T  18856591 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgtctgcactttgttagagacatgattgaatcaaaagagattgtggttg 18856492  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| ||| | ||||||| ||||||||||| || || |||||||| |||||    
T  18856491 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattacctcgatcaagattcaagcattgcttggacttgatcaagtttgt 18856398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 334 - 527
Target Start/End: Original strand, 9228404 - 9228597
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  9228404 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtagttg 9228503  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | ||||||||| ||||||||||| || || |||||||| |||||    
T  9228504 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctagatcaagattcaagcattgcttggacttgatcaaatttgt 9228597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 334 - 521
Target Start/End: Complemental strand, 3778453 - 3778266
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| | |||||||||||||||||||||||||| || | |||||| ||||| || || |||||  ||||  |||||||||| || || ||||| || |    
T  3778453 cacttggcgaatcatcaagtgtatcatgagaggacaaagcgcattgacattcgcttgcactttgttagagatatgattgaatcaaaagagattgtggtgg 3778354  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 521  Q
    ||||||  |  ||| |||| |||||  |  ||||||| ||||| | | ||| ||||||||||||||||||||| || || ||||||||    
T  3778353 aaaaagtggcatcggaagataatccggcggatgtgtttaccaagtgattacctagatcaaggttcaagcattgcttggacttgatcaa 3778266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 334 - 437
Target Start/End: Original strand, 6742608 - 6742711
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| | |||||||||||||||||||||||||| || |||||||| ||||| || || |||||  ||||| |||||||||| || || ||||| ||||    
T  6742608 cacttggcgaatcatcaagtgtatcatgagaggactaagcacattgacattcgcttgcactttgttagagacatgattgaatcaaaagagattgtggttg 6742707  T
Q  434 aaaa 437  Q
    ||||    
T  6742708 aaaa 6742711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 347 - 521
Target Start/End: Complemental strand, 5144135 - 5143961
Alignment:
Q  347 atcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaagatgtttc 446  Q
    |||||||||||||||||||||| || |||||||| ||||| || || |||||| ||||| || || |||| || || || || || | ||| |  |  ||    
T  5144135 atcaagtgtatcatgagaggacaaagcacattgacattcgcttgcactttgtcagagacatggttaaatcaaaagatatcgtggtggtaaaggtggcatc 5144036  T
Q  447 gaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 521  Q
    |||||| ||||| ||  ||||||| ||||||||| | | ||||||||||||||||||||| ||  ||||||||||    
T  5144035 gaaagagaatccgacggatgtgtttaccaaatcattgcctagatcaaggttcaagcattgcttgaaattgatcaa 5143961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 334 - 416
Target Start/End: Original strand, 3792205 - 3792287
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatc 416  Q
    |||||| | |||||||||||||||||||||||||| || |||||||| ||| | || || |||||  ||||| ||||||||||    
T  3792205 cacttggcgaatcatcaagtgtatcatgagaggactaagcacattgacatttgcttgcactttgttagagacatgattgaatc 3792287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 334 - 521
Target Start/End: Complemental strand, 39483781 - 39483594
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| | ||||||||||||||||||||||| || || |||||||| ||||| || || |||||  ||||| |||||||||| || || ||||| ||||    
T  39483781 cacttggcgaatcatcaagtgtatcatgagagaactaagcacattgacattcgcttgcactttgttagagacatgattgaatcaaaagagattgtggttg 39483682  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 521  Q
    |||| |  |  ||| |||| |||||  |  ||||||||||||| ||| | | ||||||||||||||||||||| || || ||||||||    
T  39483681 aaaaggtggcatcggaagagaatccggcggatgtgttcaccaagtcattgcctagatcaaggttcaagcattgcttggacttgatcaa 39483594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 334 - 527
Target Start/End: Complemental strand, 19345292 - 19345099
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||| ||||| |||||||| | || || ||||| ||||    
T  19345292 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgtcagagacatgattgaaacaaaagagattgtggttg 19345193  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  19345192 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgtttggacttgatcaagtttgt 19345099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 341 - 506
Target Start/End: Complemental strand, 22713301 - 22713136
Alignment:
Q  341 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 440  Q
    |||||||||| || |||||||| ||||| ||||||||||| |||||||| || || ||  ||||| |||||||  | ||||| ||  | || || ||||     
T  22713301 caaatcatcaggtatatcatgaaaggacaaaacacattgacattcgtttgcacttcgtaagagacatgattgagacaaaggagatcatggtagagaaagt 22713202  T
Q  441 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  ||||||||||||||||||||    
T  22713201 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaaggttcaagcattg 22713136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 346 - 506
Target Start/End: Complemental strand, 31056961 - 31056801
Alignment:
Q  346 catcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaagatgttt 445  Q
    ||||||||||||||||| ||||  || |||||||| ||||| || || |||||  ||||| |||||||||| || || ||||| || |||||||  |  |    
T  31056961 catcaagtgtatcatgaaaggattaagcacattgacattcgcttccactttgttagagacatgattgaatcaaaagagattgtggtggaaaaagtggcat 31056862  T
Q  446 cgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
     | |||| |||||  || ||||||| ||||| ||| | | |||||||||||||||||||||    
T  31056861 tggaagagaatccggcatatgtgtttaccaagtcattgcctagatcaaggttcaagcattg 31056801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 506
Target Start/End: Original strand, 2740319 - 2740484
Alignment:
Q  341 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 440  Q
    |||| ||||||||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  2740319 caaaccatcaagtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagacaaaggagatcatggtagagaaagt 2740418  T
Q  441 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  ||| ||| ||||||||||||    
T  2740419 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagagcaaagttcaagcattg 2740484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 506
Target Start/End: Original strand, 39686361 - 39686526
Alignment:
Q  341 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 440  Q
    |||||||||| ||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | |||||  |  | || || ||||     
T  39686361 caaatcatcaggtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagctcatggtagagaaagt 39686460  T
Q  441 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  39686461 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 39686526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 334 - 527
Target Start/End: Original strand, 1457 - 1650
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||| | || || || || ||||    
T  1457 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaagcaaaagagatcgtggttg 1556  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    ||||||  |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || ||||||||||||||    
T  1557 aaaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaattttgt 1650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 334 - 527
Target Start/End: Original strand, 13502 - 13695
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  13502 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 13601  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  13602 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaagtttgt 13695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 334 - 527
Target Start/End: Original strand, 18381 - 18574
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  18381 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 18480  T
Q  434 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  18481 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaagtttgt 18574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 343 - 537
Target Start/End: Original strand, 24435154 - 24435348
Alignment:
Q  343 aatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaagatg 442  Q
    |||||||||||| ||||||||||||| || |||||||| ||||| ||| | ||||   || || |||||||||| || || ||||| || |||||||  |    
T  24435154 aatcatcaagtgcatcatgagaggactaagcacattgacattcgctttaactttgatagaaacatgattgaatcaaaagagattgtggtggaaaaagtgg 24435253  T
Q  443 tttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagagagtaa 537  Q
      ||| |||| | |||  |  || |||| ||||| ||| ||| ||||||||||||||||||||| || || |||||||| ||||||  |||||||    
T  24435254 catcggaagaaagtccggcggatatgtttaccaagtcattacctagatcaaggttcaagcattgcttggacttgatcaagtttgttgaagagtaa 24435348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 341 - 506
Target Start/End: Original strand, 13882853 - 13883018
Alignment:
Q  341 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 440  Q
    |||||||||| ||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  13882853 caaatcatcaggtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagagaaagt 13882952  T
Q  441 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  13882953 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 13883018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 341 - 506
Target Start/End: Complemental strand, 31249518 - 31249353
Alignment:
Q  341 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 440  Q
    |||||||||| ||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  31249518 caaatcatcaggtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagagaaagt 31249419  T
Q  441 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  31249418 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 31249353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 334 - 439
Target Start/End: Original strand, 33335148 - 33335253
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 433  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||| ||||| |||||||| | || || ||||| ||||    
T  33335148 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgtcagagacatgattgaagcaaaagagattgtggttg 33335247  T
Q  434 aaaaag 439  Q
    | ||||    
T  33335248 agaaag 33335253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 341 - 506
Target Start/End: Complemental strand, 35202130 - 35201965
Alignment:
Q  341 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 440  Q
    |||||||||| ||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  35202130 caaatcatcaggtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagagaaagt 35202031  T
Q  441 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  35202030 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 35201965  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 334 - 527
Target Start/End: Original strand, 14741643 - 14741837
Alignment:
Q  334 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaat-ccaaggaaattgttgtt 432  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| ||||||||| | || || ||||| |||    
T  14741643 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatacaaaagagattgtggtt 14741742  T
Q  433 gaaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 527  Q
    || ||||  |  ||| | || ||| |  |  ||||||||||||| ||| | | ||||||||| ||||||||||| || || |||||||| |||||    
T  14741743 gagaaagtggcatcggaggataattcggcggatgtgttcaccaagtcattgcctagatcaagattcaagcattgcttggacttgatcaagtttgt 14741837  T

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Target: scaffold1764 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1764
Description:

Target: scaffold1764; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 506
Target Start/End: Original strand, 833 - 998
Alignment:
Q  341 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 440  Q
    ||||||||||||| |||||||| || || || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  833 caaatcatcaagtatatcatgaaagaacaaagcacattgacattcgtttgcacttagtcagagacatgattgagacaaaggagatcatggtagagaaagt 932  T
Q  441 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 506  Q
     |  ||  ||||||||||| || |  |||||||||||||| |||  ||||||||||||||||||||    
T  933 ggcatcagaagacaatccagcagacatgttcaccaaatcattaccaagatcaaggttcaagcattg 998  T

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Target: scaffold0078 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 464 - 537
Target Start/End: Complemental strand, 32925 - 32852
Alignment:
Q  464 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagagagtaa 537  Q
    ||||||| ||||| ||| ||| ||||||||||||||||||||| || || |||||||| ||||||  |||||||    
T  32925 atgtgtttaccaagtcattacctagatcaaggttcaagcattgcttagacttgatcaagtttgttgaagagtaa 32852  T

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Target: scaffold0006 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 6535 - 6491
Alignment:
Q  342 aaatcatcaagtgtatcatgagaggaccaaacacattgatattcg 386  Q
    ||||||||||||||||||||||||||| || |||||||| |||||    
T  6535 aaatcatcaagtgtatcatgagaggacaaagcacattgacattcg 6491  T

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Target: scaffold0006; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 7047 - 7003
Alignment:
Q  342 aaatcatcaagtgtatcatgagaggaccaaacacattgatattcg 386  Q
    ||||||||||||||||||||||||||| || |||||||| |||||    
T  7047 aaatcatcaagtgtatcatgagaggacaaagcacattgacattcg 7003  T

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Target: scaffold0006; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 464 - 521
Target Start/End: Complemental strand, 6460 - 6403
Alignment:
Q  464 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 521  Q
    ||||||| ||||| ||| | ||||||||||||||||||||||| || || ||||||||    
T  6460 atgtgtttaccaagtcattgcttagatcaaggttcaagcattgcttggacttgatcaa 6403  T

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