View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8761_high_4 (Length: 487)

Name: NF8761_high_4
Description: NF8761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8761_high_4
NF8761_high_4
[»] chr8 (9 HSPs)
chr8 (50-222)||(26981035-26981207)
chr8 (50-223)||(26083903-26084079)
chr8 (85-222)||(5334308-5334445)
chr8 (48-107)||(42932714-42932773)
chr8 (50-119)||(42315342-42315412)
chr8 (50-119)||(23828343-23828413)
chr8 (50-119)||(45244285-45244355)
chr8 (50-83)||(7496758-7496791)
chr8 (106-223)||(42934922-42935039)
[»] chr7 (6 HSPs)
chr7 (48-252)||(20077210-20077414)
chr7 (49-168)||(4407778-4407895)
chr7 (57-198)||(30061499-30061640)
chr7 (48-117)||(39742297-39742366)
chr7 (48-105)||(11072196-11072253)
chr7 (48-120)||(48850724-48850795)
[»] chr6 (8 HSPs)
chr6 (50-189)||(31442517-31442655)
chr6 (49-252)||(21762021-21762224)
chr6 (50-220)||(7867848-7868018)
chr6 (47-137)||(20915980-20916070)
chr6 (44-163)||(826689-826808)
chr6 (53-188)||(30836413-30836548)
chr6 (50-119)||(31665629-31665699)
chr6 (52-119)||(15296147-15296215)
[»] chr3 (15 HSPs)
chr3 (50-253)||(1529165-1529369)
chr3 (64-209)||(11582588-11582733)
chr3 (45-199)||(52041305-52041459)
chr3 (50-199)||(42655773-42655922)
chr3 (50-203)||(39484726-39484879)
chr3 (59-132)||(2241442-2241515)
chr3 (50-186)||(1141744-1141880)
chr3 (83-220)||(45069925-45070061)
chr3 (49-209)||(22424281-22424441)
chr3 (156-223)||(2241373-2241440)
chr3 (50-120)||(15291461-15291530)
chr3 (53-102)||(2241514-2241563)
chr3 (50-97)||(49235500-49235547)
chr3 (50-107)||(15996392-15996449)
chr3 (43-83)||(48910166-48910206)
[»] chr2 (10 HSPs)
chr2 (49-252)||(38996388-38996591)
chr2 (50-196)||(32281486-32281632)
chr2 (48-137)||(28125534-28125623)
chr2 (50-222)||(29280085-29280257)
chr2 (50-122)||(22625385-22625457)
chr2 (10-51)||(3406311-3406352)
chr2 (49-197)||(38955763-38955911)
chr2 (53-118)||(21922337-21922402)
chr2 (50-120)||(6667463-6667532)
chr2 (50-83)||(28926075-28926108)
[»] chr5 (6 HSPs)
chr5 (48-174)||(6697933-6698059)
chr5 (50-220)||(19557813-19557982)
chr5 (87-233)||(9045160-9045306)
chr5 (49-119)||(37337322-37337393)
chr5 (48-185)||(31981791-31981927)
chr5 (50-119)||(26110688-26110758)
[»] chr4 (9 HSPs)
chr4 (49-186)||(27067873-27068010)
chr4 (53-219)||(9451245-9451411)
chr4 (50-168)||(10427600-10427717)
chr4 (50-165)||(9199750-9199865)
chr4 (50-112)||(9199512-9199574)
chr4 (49-119)||(12094856-12094926)
chr4 (49-198)||(24257702-24257852)
chr4 (93-165)||(9201332-9201404)
chr4 (50-112)||(6898760-6898822)
[»] chr1 (2 HSPs)
chr1 (49-196)||(15700720-15700867)
chr1 (50-196)||(22964007-22964153)


Alignment Details
Target: chr8 (Bit Score: 105; Significance: 3e-52; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 26981035 - 26981207
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 149  Q
    |||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| || ||||| |||| |||| ||||||    
T  26981035 atctttcttactaaagcttgtttgatcaagcaatatcataccctaattttaacctaatatttttcctccatcatccaagcattaaattctccttagtgtt 26981134  T
Q  150 tttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatgta 222  Q
    ||||||||||||| || || ||||||| ||||||||| ||||||||||||| || ||||| || |||||||||    
T  26981135 tttcctaatcatcgctataggttcaaaatctaaatttccctcccacaacaaatgtagtctgccaatgcatgta 26981207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 26083903 - 26084079
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 149  Q
    ||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| ||||||||||  | ||||| |||| | || |||| |    
T  26083903 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattttccctccatcatcaaagcattaaattcttcttagtgct 26084002  T
Q  150 tttccta---atcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatgtac 223  Q
    |||||||   |||||||||||| ||||||| || |||||| |||| |||| || ||  ||||| || ||||||||||    
T  26084003 tttcctaatcatcatcactctaggttcaaaatccaaatttccctctcacaccacttttagtctgccgatgcatgtac 26084079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 5334308 - 5334445
Alignment:
Q  85 tcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtttttcctaatcatcactctaagttcaaattctaaat 184  Q
    |||||||||||||||||||||| ||||| |||||||||| || ||||| |||| || | | || ||||||||||||||||| || ||| ||| |||||||    
T  5334308 tcataccctaattttaacctaagattttccctccatcatccaagcattaaattctctttaatgcttttcctaatcatcactataggttgaaaatctaaat 5334407  T
Q  185 tttcctcccacaacaattggagtcttcctatgcatgta 222  Q
    || ||||||||||||| || ||||| || |||||||||    
T  5334408 ttccctcccacaacaaatgtagtctgccgatgcatgta 5334445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 42932714 - 42932773
Alignment:
Q  48 aaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaat 107  Q
    ||||||||||||||||||||||| || |||||| || ||||| |||||||||||||||||    
T  42932714 aaatctttcttactaaagcttgtctgatcaagcaatatcatatcctaattttaacctaat 42932773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 42315342 - 42315412
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaatt-ttaacctaatatttttcctcca 119  Q
    ||||||||||||||||||||||||||||||||||     ||||||||| ||||||||||||||| ||||||    
T  42315342 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaatattttccctcca 42315412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 23828343 - 23828413
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaa-ttttaacctaatatttttcctcca 119  Q
    ||||||||||||| ||||||||||||||||||||     ||||||| ||||||||||||||||| ||||||    
T  23828343 atctttcttactagagcttgtttggtcaagctattagtaaccctaatttttaacctaatattttccctcca 23828413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 45244355 - 45244285
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaatt-ttaacctaatatttttcctcca 119  Q
    |||||||||||||||| |||| ||||||||||||     ||||||||| ||||||||||||||| ||||||    
T  45244355 atctttcttactaaagtttgtctggtcaagctattagtaaccctaattcttaacctaatattttccctcca 45244285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 7496758 - 7496791
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctat 83  Q
    |||||||||||||||||||||||| |||||||||    
T  7496758 atctttcttactaaagcttgtttgatcaagctat 7496791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 42934922 - 42935039
Alignment:
Q  106 atatttttcctccatcatacatgcatttaattttcctcagtgtttttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattgga 205  Q
    ||||||| ||||||||||  |  |||| |||| |||| | || ||||||||||||||||  || ||||||| || ||||||||||| |||| || ||  |    
T  42934922 atattttccctccatcatcaaaacattaaattctccttaatgcttttcctaatcatcaccttaggttcaaaatccaaattttcctctcacaccactttta 42935021  T
Q  206 gtcttcctatgcatgtac 223  Q
    |||| || ||||||||||    
T  42935022 gtctgccgatgcatgtac 42935039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 48 - 252
Target Start/End: Complemental strand, 20077414 - 20077210
Alignment:
Q  48 aaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtg 147  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| || ||||| ||||  ||| ||||    
T  20077414 aaatctttcttactaaagcttgtttggtcaagcaatatcataccctaattttaacctaatattttccctccatcatccaagcattaaattcaccttagtg 20077315  T
Q  148 tttttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatgtacgtaaggcatatatatgatggcatt 247  Q
     ||||||||||||||||| || |||||||||||||||||  |||||| ||||||| |||| |    |||||||||  ||||||||||  |||||||||||    
T  20077314 cttttcctaatcatcactttaggttcaaattctaaatttcgctcccataacaattagagtttgtggatgcatgtatctaaggcatatggatgatggcatt 20077215  T
Q  248 taata 252  Q
    |||||    
T  20077214 taata 20077210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 49 - 168
Target Start/End: Original strand, 4407778 - 4407895
Alignment:
Q  49 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 148  Q
    ||||||||||||||||||  || ||||||||| || |||||||||||||||||||||||||||| |||||||||  ||  |||| |||| |||| |||||    
T  4407778 aatctttcttactaaagc--gtctggtcaagcaatatcataccctaattttaacctaatattttccctccatcacccaaacattaaattctccttagtgt 4407875  T
Q  149 ttttcctaatcatcactcta 168  Q
    |||||||||||||| |||||    
T  4407876 ttttcctaatcatcgctcta 4407895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 57 - 198
Target Start/End: Original strand, 30061499 - 30061640
Alignment:
Q  57 ttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtttttccta 156  Q
    |||||||||||||| || |||||||||||||||||||||||| | ||||||||||| |||||||  |||| | |||||||| | |  |||| || |||||    
T  30061499 ttactaaagcttgtctgatcaagctatctcataccctaatttaaccctaatattttccctccattgtacaagtatttaattcttcaaagtgcttatccta 30061598  T
Q  157 atcatcactctaagttcaaattctaaattttcctcccacaac 198  Q
    |||||||||||||  | |||||| || ||| |||||||||||    
T  30061599 atcatcactctaatcttaaattcaaattttccctcccacaac 30061640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 39742366 - 39742297
Alignment:
Q  48 aaatctttcttactaaagcttgtttggtcaagctatctcat-accctaattttaacctaatatttttcctc 117  Q
    |||||||||||||||||||||||||| ||||||||| | || |||||||| ||||||||||||||| ||||    
T  39742366 aaatctttcttactaaagcttgtttgatcaagctat-tgataaccctaatcttaacctaatattttccctc 39742297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 11072253 - 11072196
Alignment:
Q  48 aaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaaccta 105  Q
    ||||||||||| |||||||||||  |||||||| ||| |  |||||||||||||||||    
T  11072253 aaatctttctttctaaagcttgtccggtcaagcaatccctaaccctaattttaaccta 11072196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 48850724 - 48850795
Alignment:
Q  48 aaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccat 120  Q
    ||||||||||| ||||||||||| || |||||||||    ||||||||| |||||||||| |||| |||||||    
T  48850724 aaatctttctttctaaagcttgtctgatcaagctattgtttaccctaatcttaacctaat-ttttccctccat 48850795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 7e-47; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 50 - 189
Target Start/End: Original strand, 31442517 - 31442655
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 149  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||| || ||||| |||| |||| |||| |    
T  31442517 atctttcttactaaagcttgtttggtcaagcaatcacataccctaattttaacctaatattttccctccatcatccaagcattaaattctcctaagtgct 31442616  T
Q  150 tttcctaatcatcactctaagttcaaattctaaattttcc 189  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  31442617 tttcctaatcatcactctaagttcaaattc-aaattttcc 31442655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 49 - 252
Target Start/End: Original strand, 21762021 - 21762224
Alignment:
Q  49 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 148  Q
    |||||||||||||||| ||||| || |||||||||  |  ||||||||||||||||| |||||| |||||||||  ||   ||||||||||| | ||||     
T  21762021 aatctttcttactaaaacttgtctgatcaagctattgctcaccctaattttaacctactattttccctccatcacccaattatttaattttcgttagtgc 21762120  T
Q  149 ttttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatgtacgtaaggcatatatatgatggcattt 248  Q
    |||||||| ||||||  |||||||||| || ||||||| |||||||||||| ||| | ||| || ||||||| || ||||| || |  |||||| |||||    
T  21762121 ttttcctactcatcaagctaagttcaatttttaaatttccctcccacaacatttgcattctgccgatgcatgcacctaaggaatgtgaatgatgacattt 21762220  T
Q  249 aata 252  Q
    ||||    
T  21762221 aata 21762224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 50 - 220
Target Start/End: Complemental strand, 7868018 - 7867848
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 149  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||| | ||||||||||| |||||||  |||| |||||||||||| || |||| |    
T  7868018 atctttcttactaaagcttatctggtcaagctatctcataccctaatttaaccctaatattttccctccattgtacaagcatttaatttttctaagtgct 7867919  T
Q  150 tttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatg 220  Q
    | || |||| ||||| | ||  |||||||| || ||| ||||||| |||  ||| ||||| || |||||||    
T  7867918 tatcttaatgatcacacaaatctcaaattcaaattttccctcccataactcttgaagtctgccgatgcatg 7867848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 47 - 137
Target Start/End: Complemental strand, 20916070 - 20915980
Alignment:
Q  47 caaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaatt 137  Q
    |||||||||||||||||||||||| || |||||| || | ||||| |||||||||||||||||||| |||||||||| || ||||| ||||    
T  20916070 caaatctttcttactaaagcttgtctgatcaagcaatatgataccttaattttaacctaatattttccctccatcatccaagcattaaatt 20915980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 44 - 163
Target Start/End: Complemental strand, 826808 - 826689
Alignment:
Q  44 aaacaaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctc 143  Q
    ||||| ||||||||||||||| ||||| ||||||||||||     ||| |||||||||||||||||||| ||||||||   ||  |||||||||||| |     
T  826808 aaacacatctttcttactaaaacttgtctggtcaagctattgttcaccttaattttaacctaatattttccctccatcgcccaatcatttaattttcgtt 826709  T
Q  144 agtgtttttcctaatcatca 163  Q
    |||| |||||||| ||||||    
T  826708 agtgcttttcctactcatca 826689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 188
Target Start/End: Complemental strand, 30836548 - 30836413
Alignment:
Q  53 tttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgttttt 152  Q
    |||||||||||||||||| || |||||| ||     ||||||||||||| |||||||||| ||||||||   || ||||||||||||| | |||| |||     
T  30836548 tttcttactaaagcttgtctgatcaagcaattgttcaccctaattttaatctaatattttccctccatcccccaagcatttaattttcatgagtgctttc 30836449  T
Q  153 cctaatcatcactctaagttcaaattctaaattttc 188  Q
    |||| ||| ||  |||||||||| || |||||||||    
T  30836448 cctactcagcaagctaagttcaatttttaaattttc 30836413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 31665699 - 31665629
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaatt-ttaacctaatatttttcctcca 119  Q
    ||||||||||||||||||||||||||||||||||     ||||||||| ||||||||||||||| ||||||    
T  31665699 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaatattttccctcca 31665629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 15296147 - 15296215
Alignment:
Q  52 ctttcttactaaagcttgtttggtcaagctatctcataccctaa-ttttaacctaatatttttcctcca 119  Q
    ||||||||||||||||||||| ||||||||||     ||||||| ||||||||||||||||| ||||||    
T  15296147 ctttcttactaaagcttgttttgtcaagctataagtaaccctaatttttaacctaatattttccctcca 15296215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 50 - 253
Target Start/End: Original strand, 1529165 - 1529369
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaatt-ttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 148  Q
    ||||||||||||||||||||||||||||||||||     ||||||||| |||||||||| |||| ||||||||||||| ||| |||||| || | | |||    
T  1529165 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaattttttccctccatcatacaagcaattaattctcgttaatgt 1529264  T
Q  149 ttttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatgtacgtaaggcatatatatgatggcattt 248  Q
    |||||||| ||||||  ||||||||||||| ||||||| |||||||||| || | |||||| || |||||| ||| ||||||||||  ||||| |||||     
T  1529265 ttttcctactcatcaaactaagttcaaattttaaatttccctcccacaaaaaattgagtctgccgatgcatctacctaaggcatatggatgattgcatta 1529364  T
Q  249 aatag 253  Q
    |||||    
T  1529365 aatag 1529369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 64 - 209
Target Start/End: Original strand, 11582588 - 11582733
Alignment:
Q  64 agcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtttttcctaatcatca 163  Q
    ||||||| ||||||||| || |||||||||||||||||||||||||||| ||||| |||| ||  |||| |||| | || ||||||||||||||| ||||    
T  11582588 agcttgtctggtcaagcaatatcataccctaattttaacctaatattttccctccgtcatccaaacattaaattcttcttagtgtttttcctaataatca 11582687  T
Q  164 ctctaagttcaaattctaaattttcctcccacaacaattggagtct 209  Q
    ||||| ||||||||  |||||||||||||||||||| ||| |||||    
T  11582688 ctctaggttcaaatcttaaattttcctcccacaacagttgtagtct 11582733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 45 - 199
Target Start/End: Complemental strand, 52041459 - 52041305
Alignment:
Q  45 aacaaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctca 144  Q
    |||| ||||||||||||||||||||| ||||||||||||     |||||||||||||||||||||||| | |||||||  || ||||||||||||  | |    
T  52041459 aacatatctttcttactaaagcttgtctggtcaagctattgttcaccctaattttaacctaatattttccttccatcacccaagcatttaattttggtta 52041360  T
Q  145 gtgtttttcctaatcatcactctaagttcaaattctaaattttcctcccacaaca 199  Q
    ||| |||||||| ||||||  |||||||||| || ||||||| ||||| ||||||    
T  52041359 gtgcttttcctactcatcaagctaagttcaatttttaaatttccctcctacaaca 52041305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 50 - 199
Target Start/End: Original strand, 42655773 - 42655922
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 149  Q
    ||||||||||| ||||||||| ||||||||||||     |||||||||||||| ||||||||| ||| |||||  || ||||||||||||  | ||||||    
T  42655773 atctttcttaccaaagcttgtctggtcaagctattgttcaccctaattttaacataatattttcccttcatcacccaagcatttaattttgattagtgtt 42655872  T
Q  150 tttcctaatcatcactctaagttcaaattctaaattttcctcccacaaca 199  Q
    ||||||| ||||||  |||||||||| || ||||||| ||||||| ||||    
T  42655873 tttcctactcatcaagctaagttcaatttttaaatttccctcccataaca 42655922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 203
Target Start/End: Complemental strand, 39484879 - 39484726
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcat-accctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 148  Q
    |||||||||||||||||||||||||||||||||| |  | |||||| ||||||||||||||||| |||||||||  ||  |||||||||||  | | ||     
T  39484879 atctttcttactaaagcttgtttggtcaagctatatgttcaccctagttttaacctaatattttccctccatcacccaaacatttaattttaattaatgc 39484780  T
Q  149 ttttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattg 203  Q
    |||||||| |||||  ||||||||||| || |||| || ||| ||||||||||||    
T  39484779 ttttcctactcatctttctaagttcaatttttaaa-ttccctgccacaacaattg 39484726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 2241515 - 2241442
Alignment:
Q  59 actaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatt 132  Q
    |||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||    
T  2241515 actaaagcttgtttcgtcaagcaatctcataccttaattttaacctaatatttttcctctatcatacaagcatt 2241442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 50 - 186
Target Start/End: Original strand, 1141744 - 1141880
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 149  Q
    ||||||||||||||||||||||||||||||| ||     || |||||||||| |||||||||| ||||||||   || ||||||||||||| | ||||||    
T  1141744 atctttcttactaaagcttgtttggtcaagcaattgttcactctaattttaatctaatattttccctccatcccccaagcatttaattttcattagtgtt 1141843  T
Q  150 tttcctaatcatcactctaagttcaaattctaaattt 186  Q
    ||||||| ||| ||  || ||||||| || |||||||    
T  1141844 tttcctactcaacaagctgagttcaatttttaaattt 1141880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 220
Target Start/End: Original strand, 45069925 - 45070061
Alignment:
Q  83 tctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtttttcctaatcatcactctaagttcaaattctaa 182  Q
    |||| ||||||||||| | ||||||||||| |||||||  |||| |||||||||||| || |||| || |||||||||||||   ||  |||||||| ||    
T  45069925 tctcctaccctaatttaaccctaatattttccctccattgtacaagcatttaatttttctaagtgcttatcctaatcatcacataaatctcaaattc-aa 45070023  T
Q  183 attttcctcccacaacaattggagtcttcctatgcatg 220  Q
    |||||||||||| |||  ||| ||||| || |||||||    
T  45070024 attttcctcccataactcttgaagtctgccgatgcatg 45070061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 49 - 209
Target Start/End: Complemental strand, 22424441 - 22424281
Alignment:
Q  49 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 148  Q
    ||||||||||||||||| || | ||||||||||||     |||||||||||||||||||||||| |||||||||   |  |||||||||||  | |||      
T  22424441 aatctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacctaaacatttaatttttgttagtac 22424342  T
Q  149 ttttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtct 209  Q
    |||||||| |||| |  ||||||| || || | ||||| |||||||||||  |||||||||    
T  22424341 ttttcctactcattaagctaagttgaatttttgaatttccctcccacaacctttggagtct 22424281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 2241440 - 2241373
Alignment:
Q  156 aatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatgtac 223  Q
    |||||||||||||| |||||| ||||||||| |||||||||||||||| | ||| || ||||||||||    
T  2241440 aatcatcactctaaattcaaaatctaaatttccctcccacaacaattgcactctgccgatgcatgtac 2241373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 15291461 - 15291530
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccat 120  Q
    ||||||||||||||||||||||||||||||||||    ||||||||| |||||||||| |||| |||||||    
T  15291461 atctttcttactaaagcttgtttggtcaagctattgtttaccctaatcttaacctaat-ttttccctccat 15291530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 2241563 - 2241514
Alignment:
Q  53 tttcttactaaagcttgtttggtcaagctatctcataccctaattttaac 102  Q
    |||||||||||||||||||| ||||||| || ||||||| ||||||||||    
T  2241563 tttcttactaaagcttgtttcgtcaagcaatttcataccttaattttaac 2241514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 49235547 - 49235500
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaatt 97  Q
    |||||||||||||||| ||||||||||||||||||   ||||||||||    
T  49235547 atctttcttactaaagtttgtttggtcaagctatcatttaccctaatt 49235500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 15996449 - 15996392
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaat 107  Q
    ||||||||||||||||||||| || |||||||||    |||||||||| |||||||||    
T  15996449 atctttcttactaaagcttgtctgatcaagctattgtttaccctaattctaacctaat 15996392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 48910206 - 48910166
Alignment:
Q  43 gaaacaaatctttcttactaaagcttgtttggtcaagctat 83  Q
    |||| ||||||||||||||| |||||||||| |||||||||    
T  48910206 gaaaaaaatctttcttactagagcttgtttgatcaagctat 48910166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 49 - 252
Target Start/End: Complemental strand, 38996591 - 38996388
Alignment:
Q  49 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 148  Q
    |||||||||||||||||||||| || ||||||||| |  ||||||||||||||||||||||||| ||||||||| |||  ||||||||| | || |||||    
T  38996591 aatctttcttactaaagcttgtctgatcaagctatatgttaccctaattttaacctaatattttccctccatcaaacaaacatttaattctgcttagtgt 38996492  T
Q  149 ttttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatgtacgtaaggcatatatatgatggcattt 248  Q
    |||||||| ||||||   |||||||||||| ||||||| ||||| ||||| |||   || | || |||||||||| | ||| || |  ||||||||||||    
T  38996491 ttttcctactcatcaagttaagttcaaattttaaatttccctcctacaactatttttgtttgccgatgcatgtacatgaggaatgtgaatgatggcattt 38996392  T
Q  249 aata 252  Q
    ||||    
T  38996391 aata 38996388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 50 - 196
Target Start/End: Original strand, 32281486 - 32281632
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 149  Q
    |||||||||||||||| |||||||||||||||||     ||||||||||||||||| |||||| |||||||| |||| ||||| |||| | |  |||| |    
T  32281486 atctttcttactaaagtttgtttggtcaagctattagtaaccctaattttaacctagtattttccctccatcctacaagcattaaattcttccaagtgct 32281585  T
Q  150 tttcctaatcatcactctaagttcaaattctaaattttcctcccaca 196  Q
    | |||||||||||||||||| || |||||| |||||| |||||||||    
T  32281586 tatcctaatcatcactctaattttaaattcaaaatttgcctcccaca 32281632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 28125534 - 28125623
Alignment:
Q  48 aaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaatt 137  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||| |||||||  |||| ||||||||||    
T  28125534 aaatctttcttactaaagcttgtctggtcaagctatctcataccctaatttaaccctaatattttccctccattgtacaagcatttaatt 28125623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 29280085 - 29280257
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 149  Q
    ||||||||||||||| ||||| || | |||||||     |||||||||||||||||||||||| |||| ||||   | |||| |||||||| | |||| |    
T  29280085 atctttcttactaaaacttgtctgatgaagctattgttcaccctaattttaacctaatattttccctcaatcacctaagcatgtaattttcgttagtgct 29280184  T
Q  150 tttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatgta 222  Q
    |||| || ||||||  |||||||||| || ||||||| |||||||||||   |||||||| || |||||||||    
T  29280185 tttcgtactcatcaagctaagttcaatttttaaatttccctcccacaacctatggagtctgccaatgcatgta 29280257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 22625457 - 22625385
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatca 122  Q
    ||||||||||||||| ||||| ||||||||| ||   |||||||||||||||||||||||||| |||||||||    
T  22625457 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatca 22625385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 3406311 - 3406352
Alignment:
Q  10 gtagattatacttggacgtgaataataaatgtggaaacaaat 51  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  3406311 gtagcttatacttggacgtgaataataaatgtggaaacaaat 3406352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 197
Target Start/End: Complemental strand, 38955911 - 38955763
Alignment:
Q  49 aatctttcttactaaagcttgtttggtcaagctatctcata-ccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtg 147  Q
    |||||| ||||||||||||| | || |||| |||| | ||| |||||||| |||||||||||||| |||||||||  || ||||||||||||  | | ||    
T  38955911 aatcttacttactaaagcttatctgatcaaactat-tgataaccctaattctaacctaatattttccctccatcacccaagcatttaatttttgttaatg 38955813  T
Q  148 tttttcctaatcatcactctaagttcaaattctaaattttcctcccacaa 197  Q
     |||||||| ||| ||   |||| ||||| ||||||||| ||||||||||    
T  38955812 cttttcctactcagcaaggtaagctcaaaatctaaatttccctcccacaa 38955763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 21922337 - 21922402
Alignment:
Q  53 tttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctcc 118  Q
    |||||| ||||||||||| || |||||||||  | ||||||||| ||||||||||||||| |||||    
T  21922337 tttctttctaaagcttgtctgatcaagctataacttaccctaatcttaacctaatattttccctcc 21922402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 6667463 - 6667532
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccat 120  Q
    ||||||||| ||||||||||||||||||||||||    |||||||||  ||||||||| |||| |||||||    
T  6667463 atctttctttctaaagcttgtttggtcaagctattgtttaccctaatcctaacctaat-ttttccctccat 6667532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 28926075 - 28926108
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctat 83  Q
    ||||||||||||||||||||| ||||||||||||    
T  28926075 atctttcttactaaagcttgtctggtcaagctat 28926108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 6697933 - 6698059
Alignment:
Q  48 aaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtg 147  Q
    ||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||||||||||| |||||||||| || ||||| |||| || | ||||    
T  6697933 aaatctttcttactaaaacttgtctggtcaagcaatctcataccttaattttaacctaatattttccctccatcatgcaagcattaaattctcttgagtg 6698032  T
Q  148 tttttcctaatcatcactctaagttca 174  Q
     ||||| |||||||| |||||||||||    
T  6698033 cttttcataatcatcgctctaagttca 6698059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 50 - 220
Target Start/End: Complemental strand, 19557982 - 19557813
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 149  Q
    ||||||||||||||||||| | |||| |||||||||||||||||||||| | |||||| ||||| ||||||  |||| |||||||||||| || |||| |    
T  19557982 atctttcttactaaagcttatctggttaagctatctcataccctaatttaaccctaatgttttt-ctccattgtacaagcatttaatttttctaagtgct 19557884  T
Q  150 tttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatg 220  Q
    | ||||||||||||| | ||  |||||||| || ||| ||||||| |||  ||| ||||| || |||||||    
T  19557883 tatcctaatcatcacacaaatctcaaattcaaattttccctcccataactcttgaagtctgccgatgcatg 19557813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 87 - 233
Target Start/End: Original strand, 9045160 - 9045306
Alignment:
Q  87 ataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtttttcctaatcatcactctaagttcaaattctaaattt 186  Q
    |||||||||||||||||||||||||| ||||||||||  |  |||| |||| |||| |||| |||||||||||||||||| | ||||||| || ||||||    
T  9045160 ataccctaattttaacctaatattttccctccatcatcaaaacattaaattctccttagtgcttttcctaatcatcactcaaggttcaaaatccaaattt 9045259  T
Q  187 tcctcccacaacaattggagtcttcctatgcatgtacgtaaggcata 233  Q
     |||| |||| || ||  ||||| || ||||||||||  ||||||||    
T  9045260 ccctctcacaccacttttagtctgccgatgcatgtacccaaggcata 9045306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 37337322 - 37337393
Alignment:
Q  49 aatctttcttactaaagcttgtttggtcaagctatctcataccctaa-ttttaacctaatatttttcctcca 119  Q
    |||||||||||||||||||||||||||||||||||     ||||||| ||||||||||||||||| ||||||    
T  37337322 aatctttcttactaaagcttgtttggtcaagctataagtaaccctaatttttaacctaatattttccctcca 37337393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 185
Target Start/End: Original strand, 31981791 - 31981927
Alignment:
Q  48 aaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtg 147  Q
    |||||||| ||||||||||||||||| |||||| ||     | |||||||||||||||||||||| ||| |||| | || ||||||||||||| | ||||    
T  31981791 aaatcttttttactaaagcttgtttgatcaagcaattgttcaacctaattttaacctaatattttccctacatcct-caagcatttaattttcatgagtg 31981889  T
Q  148 tttttcctaatcatcactctaagttcaaattctaaatt 185  Q
     |||||||| ||| ||  ||||||| || || ||||||    
T  31981890 cttttcctactcagcaagctaagtttaatttttaaatt 31981927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 26110688 - 26110758
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaa-ttttaacctaatatttttcctcca 119  Q
    ||||||||||||||| ||||||||||||||||||     ||||||| ||||||||||||||||| ||||||    
T  26110688 atctttcttactaaaacttgtttggtcaagctataagtaaccctaatttttaacctaatattttccctcca 26110758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 49 - 186
Target Start/End: Original strand, 27067873 - 27068010
Alignment:
Q  49 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 148  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||||||||| |||||||||| |||  |||||| | |||||||||| |||| ||||     
T  27067873 aatctttcttactaaagcttgtttggtcaaactatcctataccctaattttaatctaatattttcccttgatcataaacgcatttaattctccttagtgc 27067972  T
Q  149 ttttcctaatcatcactctaagttcaaattctaaattt 186  Q
    |||||||| ||||||  ||||||||||| | |||||||    
T  27067973 ttttcctactcatcaagctaagttcaaaatttaaattt 27068010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 53 - 219
Target Start/End: Original strand, 9451245 - 9451411
Alignment:
Q  53 tttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgttttt 152  Q
    |||||||||||||||||| ||||||||||||     |||||||||||||||||||||||| |||||||||  || ||||||||||||| | |||| ||||    
T  9451245 tttcttactaaagcttgtctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaagcatttaattttcgttagtgctttt 9451344  T
Q  153 cctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcat 219  Q
    | || ||||||  |||||||||| || ||||||| |||||||||||   |||||||| || ||||||    
T  9451345 cgtactcatcaagctaagttcaatttttaaatttccctcccacaacctatggagtctgccaatgcat 9451411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 50 - 168
Target Start/End: Complemental strand, 10427717 - 10427600
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 149  Q
    |||||| ||| ||||| |||||||||||||| || |||||||||||||||||||||||| ||| |||||||||| || ||||| |||| | || ||||||    
T  10427717 atcttttttattaaaggttgtttggtcaagcaatatcataccctaattttaacctaata-tttccctccatcatccaagcattaaattcttcttagtgtt 10427619  T
Q  150 tttcctaatcatcactcta 168  Q
    |||||||||||||||||||    
T  10427618 tttcctaatcatcactcta 10427600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 9199750 - 9199865
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 149  Q
    ||||||||||||||||||||| ||||||||| || ||||| || | | ||||||||||||||| |||||||||| || ||||| |||| |||| |||  |    
T  9199750 atctttcttactaaagcttgtctggtcaagcaatatcatatcccactattaacctaatattttccctccatcatccaagcattaaattctccttagttct 9199849  T
Q  150 tttcctaatcatcact 165  Q
    ||||||||||||||||    
T  9199850 tttcctaatcatcact 9199865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 9199512 - 9199574
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttt 112  Q
    ||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||    
T  9199512 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatatttt 9199574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 12094926 - 12094856
Alignment:
Q  49 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctcca 119  Q
    |||||||||||||||||||||||||||||||||||   | |||||||||||||||||||||||| ||||||    
T  12094926 aatctttcttactaaagcttgtttggtcaagctattagaaaccctaattttaacctaatattttccctcca 12094856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 49 - 198
Target Start/End: Original strand, 24257702 - 24257852
Alignment:
Q  49 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgca-tttaattttcctcagtg 147  Q
    |||||||||||||||||||||||||||||||| ||     ||||||||||||||||||||||||||||||||||   | ||| ||||||| |  |  |||    
T  24257702 aatctttcttactaaagcttgtttggtcaagcaattgttcaccctaattttaacctaatatttttcctccatcacctaagcattttaattgtagttggtg 24257801  T
Q  148 tttttcctaatcatcactctaagttcaaattctaaattttcctcccacaac 198  Q
     |||||||||||||||  |||||||||| || || || | |||||||||||    
T  24257802 cttttcctaatcatcaaactaagttcaatttttatatctccctcccacaac 24257852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 9201332 - 9201404
Alignment:
Q  93 taattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtttttcctaatcatcact 165  Q
    |||||||||||||||||||| || ||||||| || ||||| |||| |||| |||  |||||||||||||||||    
T  9201332 taattttaacctaatattttcccaccatcatccaagcattaaattctccttagttcttttcctaatcatcact 9201404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 6898822 - 6898760
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttt 112  Q
    |||||||||||||||||||||||| |||||||||     |||||||| |||||||||||||||    
T  6898822 atctttcttactaaagcttgtttgatcaagctattggtaaccctaatcttaacctaatatttt 6898760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 49 - 196
Target Start/End: Original strand, 15700720 - 15700867
Alignment:
Q  49 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 148  Q
    ||||||||||||||||| |||||||||||||||||     ||||||||||||||||| |||||| |||||||| |||| ||||| |||| | |  ||||     
T  15700720 aatctttcttactaaagtttgtttggtcaagctattagtaaccctaattttaacctagtattttccctccatcctacaagcattaaattcttccaagtgc 15700819  T
Q  149 ttttcctaatcatcactctaagttcaaattctaaattttcctcccaca 196  Q
    || |||||||||||||||||| || |||||| |||||| |||||||||    
T  15700820 ttatcctaatcatcactctaattttaaattcaaaatttgcctcccaca 15700867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 50 - 196
Target Start/End: Original strand, 22964007 - 22964153
Alignment:
Q  50 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 149  Q
    ||||| ||||||||||||||| ||||||||||||     ||||||||| |||||||||||||| |||||||||  || ||||||||||||  | |||| |    
T  22964007 atcttacttactaaagcttgtctggtcaagctattggtaaccctaattctaacctaatattttccctccatcaaccaagcatttaatttttgttagtgct 22964106  T
Q  150 tttcctaatcatcactctaagttcaaattctaaattttcctcccaca 196  Q
    ||||||| ||| ||   |||| ||||| ||||||||| |||||||||    
T  22964107 tttcctactcagcaaggtaagctcaaaatctaaatttccctcccaca 22964153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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