View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8761_low_10 (Length: 439)
Name: NF8761_low_10
Description: NF8761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8761_low_10 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 10 - 439
Target Start/End: Original strand, 36898698 - 36899130
Alignment:
| Q |
10 |
gacatcaccatctattaatgtactttcttgtaggacatttcaaagaaaaattatgccatgggaggttgacatatactgttaattgagttccatcttagga |
109 |
Q |
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| T |
36898698 |
gacatcaccatctattaatgtactttcttgtaggacatttcaaagaaaaattatgccatgggaggttgacatatgctgttagttgagttccatcttagga |
36898797 |
T |
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| Q |
110 |
aatgggttagcactcaggcatacgtgcgaagctggtgccatgaaaccaaatttaaagtcaaatgtactatcgacaatttagaactggtggagtttaactt |
209 |
Q |
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| T |
36898798 |
aatgggttagcactcaggcatacgtgcgaagctggtgccatgaaaccaaatttaaagtcaaatgtactatcgacaatttagaactggtggagtttaactt |
36898897 |
T |
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| Q |
210 |
gaaccactatcataatactagtattatcataaattgatagtaccttaattatcaattacaacttgtgctaaaaaacatacatctcaagaatcattacgga |
309 |
Q |
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| T |
36898898 |
gaaccactatcataatactagtattatcataaattgatagtaccttaattatcaattacaacttgtgctaaaaatcatacatctcaagaatcattacgga |
36898997 |
T |
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| Q |
310 |
ttgaatattttgggcagacccacgtctatggtatctac---ctaaccaacttcccataagatttcttgcagacctcttcactcattcctcaattataaaa |
406 |
Q |
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| T |
36898998 |
ttgaatattttgggcagacccacgtctatggtatctactatctaaccaacttcccataagatttcttgcagacctcttcactcattcctcaattataaaa |
36899097 |
T |
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| Q |
407 |
ccttaccacattattctaaattttcttacatcc |
439 |
Q |
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| T |
36899098 |
ccttaccacattattccaaattttcttacatcc |
36899130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 428
Target Start/End: Complemental strand, 37009197 - 37009132
Alignment:
| Q |
363 |
taagatttcttgcagacctcttcactcattcctcaattataaaaccttaccacattattctaaatt |
428 |
Q |
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| T |
37009197 |
taagatttcttgcaggcctcttcactcactcctcaattataaaaccttaccacatcattccaaatt |
37009132 |
T |
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