View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8761_low_11 (Length: 426)
Name: NF8761_low_11
Description: NF8761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8761_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 22 - 413
Target Start/End: Complemental strand, 42823189 - 42822791
Alignment:
| Q |
22 |
atatatgctgtcattattaccatatacagaagaaagaaatcaaatcatcaatgatattgtatt------taatgagtttgttattagtggattaaatgct |
115 |
Q |
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| T |
42823189 |
atatatgctgtcattattaccatatacagaagaaagaaatcaaatcatcaatgatattgtattgttatttaatgagtttgttattagtggattaaatgct |
42823090 |
T |
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| Q |
116 |
gttgtactattagggtcaatttttctatgagttggttgttgggg-cacagataaggcataagtcctctttaccaatatctatctaatttgggccattcat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42823089 |
gttgtactattagggtcaatttttctatgagttggttgttgggggcacagataaggcataagtcctctttaccaatatctatctaatttgggccattcat |
42822990 |
T |
|
| Q |
215 |
tttgtattgcatttaatttgggtgtccaagatattctcatattcaatgaatagcagattttagttacgttactatttattatggtacatctttggagtgt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42822989 |
tttgtattgcatttaatttgggtgtccaagatattctcatattcaatgaatatcagattttagttacgttagtatttattatggtacatctttggagtgt |
42822890 |
T |
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| Q |
315 |
tttacactgcttcttttgaaagtgacaagaaatagatccaattttaatttgtagaaatttgttatgaagaggccaatttgaagaccttaattttcatct |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42822889 |
tttacactgcttcttttgaaagtgacaagaaatagatccaattttaatttgtagaaatttgttatgaagaggccaatttgaagaccttaattttaatct |
42822791 |
T |
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