View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8761_low_13 (Length: 411)
Name: NF8761_low_13
Description: NF8761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8761_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 402
Target Start/End: Original strand, 42958843 - 42959225
Alignment:
| Q |
20 |
cttgataatcaaacacgtggacaaactgaagtctggtactcctattcacatgcttcacaaacaacatacaattcttctcattgttccctttttgcataga |
119 |
Q |
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| T |
42958843 |
cttgataatcaaacacgtggacaaactgaagtctggtactcctattcacatgcttcacaaacaacatacaatttttctcattgttcccttcttgcataga |
42958942 |
T |
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| Q |
120 |
catggaacaannnnnnnnnctttgtataatttccaccacacattgtatttgatcttcagtagcttgaccaaataataataaaatcattgacaaacatgag |
219 |
Q |
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| T |
42958943 |
catggaacaatttttttttctttgtataatttccaccacacattgtatttgatcttcaataggttgaccaaataataataaaatcattgacaaacatgag |
42959042 |
T |
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| Q |
220 |
acgtgacactaatgttctatttatacgagctctcaacaccttttgctcaccgttttgacacaacctccggtattaaattggaaagcctatctatacacat |
319 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42959043 |
acgtgacactaacgttctatttttacgagctctcaacaccttttgctcaccgttttgacacaacctccggtattaaattggaaagcctatctatacacac |
42959142 |
T |
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| Q |
320 |
gacaaaaggataaggagagattgaatctccctgctttatgtctttcgtcatagtaaagaaattggacctatcttcatctcact |
402 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||| ||||| |
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| T |
42959143 |
gacaaaaggataaggagagattgaatctccctcctttatgtctttggtcatagtaaagaaattggacctatctccatttcact |
42959225 |
T |
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