View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8761_low_14 (Length: 401)

Name: NF8761_low_14
Description: NF8761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8761_low_14
NF8761_low_14
[»] chr1 (8 HSPs)
chr1 (18-391)||(47712871-47713244)
chr1 (18-375)||(47759802-47760159)
chr1 (91-375)||(47745479-47745754)
chr1 (91-381)||(47717684-47717965)
chr1 (323-375)||(47704889-47704941)
chr1 (18-51)||(47745794-47745827)
chr1 (222-263)||(47811738-47811779)
chr1 (223-263)||(6521987-6522027)
[»] chr5 (1 HSPs)
chr5 (330-375)||(28830931-28830976)


Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 47713244 - 47712871
Alignment:
Q  18 gttgcgttactcaaaccgatcaatatttggcattcttgaatggtcaccaaagttttatatgtcgaacccgaacaatgtaaccgaggtggatctatttaat 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47713244 gttgcgttactcaaaccaatcaatatttggcattcttgaatggtcaccaaagttttatatgtcgaacccgaacaatgtaaccgaggtggatccatttaat 47713145  T
Q  118 cgagttcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttga 217  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713144 cgagttcttggaaacttgatgaggaaactgagagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttga 47713045  T
Q  218 attttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaattta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713044 attttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaattta 47712945  T
Q  318 ctgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctatcgcttctctg 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47712944 ctgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctatcgcttctctg 47712871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 47760159 - 47759802
Alignment:
Q  18 gttgcgttactcaaaccgatcaatatttggcattcttgaatggtcaccaaagttttatatgtcgaacccgaacaatgtaaccgaggtggatctatttaat 117  Q
    ||||||||||||||||||||||||||| ||| || | ||| | ||||||||||||||||||| ||||    | |||||||| |||||||||| ||||||     
T  47760159 gttgcgttactcaaaccgatcaatattcggcgttatggaaggttcaccaaagttttatatgtggaacatatataatgtaacagaggtggatcaatttaac 47760060  T
Q  118 cgagttcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttga 217  Q
    | ||||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||| ||| |||||| | ||||||||||||||||| |||||||    
T  47760059 caagttcttgggaacttgatgaggaaactgaaagagaaagctgcatcaagtgattctcgtcgtaaatttgctacagataatgcaactgatgtaaatttga 47759960  T
Q  218 attttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaattta 317  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||   |||||| ||||| ||||||| ||     
T  47759959 attttcaaaccatatatggtcttgttcagtgcacacctgatttgtcagagcaagattgcaataattgtttagatggtgctatctcagatattccaagttg 47759860  T
Q  318 ctgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa 375  Q
     ||| |||||||||||||| |||||||| ||||||||||||||||||| |||||||||    
T  47759859 ttgtaataacaagattggtggtagagttctcaaaccaagttgtaatatcagatatgaa 47759802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 91 - 375
Target Start/End: Complemental strand, 47745754 - 47745479
Alignment:
Q  91 aatgtaaccgaggtggatctatttaatcgagttcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaagtttgctg 190  Q
    ||||||||||| |||| || |||||||| ||||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||| ||||||||||     
T  47745754 aatgtaaccgatgtggctcaatttaatcaagttcttgggaacttgatgaggaaactcaatgaaatagctgcatcaggtgattctcgtcgtaagtttgcta 47745655  T
Q  191 cggataatgcaactgatgtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttaga 290  Q
    | | ||||||||||         ||||||||| |||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||    
T  47745654 ccgctaatgcaact---------ttgaattttgaaaccatatatggtcttgtgcagtgtacacctgacttgtcaggacaagattgcaatgattgtttaga 47745564  T
Q  291 gtttgctatatcagaaattccaatttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa 375  Q
    |  |||||| ||||||| ||||| ||  | |||||||||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  47745563 gcgtgctatttcagaaactccaagttttttttataacaagattggtggtagagttctcaaactaagttgtaatattagatatgaa 47745479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 91 - 381
Target Start/End: Complemental strand, 47717965 - 47717684
Alignment:
Q  91 aatgtaaccgaggtggatctatttaatcgagttcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaagtttgctg 190  Q
    |||| |||||||||||||| |||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||     
T  47717965 aatgcaaccgaggtggatcaatttaatcaagttcttgggaacttgatgaggaaactcaaagaaatagcagcatcaagtgattctcgtcgtaagtttgcta 47717866  T
Q  191 cggataatgcaactgatgtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttaga 290  Q
    | | ||||||||||         ||||||||| |||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  47717865 ccgctaatgcaact---------ttgaattttgaaaccacatatggtcttgtgcagtgtacacctgatttatcacagcaagattgcaatgattgtttaga 47717775  T
Q  291 gtttgctatatcagaaattccaatttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctat 381  Q
    |  |||||| ||||||||||| ||||| | | |||||||| ||||  ||| |||| ||||||||||||| ||||||||| ||||| |||||    
T  47717774 gcgtgctatttcagaaattcctatttattttaataacaaggttggcggtatagttctcaaaccaagttgcaatattagacatgaaatctat 47717684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 47704941 - 47704889
Alignment:
Q  323 ataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa 375  Q
    |||||||||||||| | |||||| ||||||||||||| |||||||||||||||    
T  47704941 ataacaagattggtggaagagttatcaaaccaagttgcaatattagatatgaa 47704889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 47745827 - 47745794
Alignment:
Q  18 gttgcgttactcaaaccgatcaatatttggcatt 51  Q
    ||||||||||||||||||||||||||||||||||    
T  47745827 gttgcgttactcaaaccgatcaatatttggcatt 47745794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 47811738 - 47811779
Alignment:
Q  222 tcaaaccatatatggtcttgtgcagtgtacacctgatttgtc 263  Q
    |||||| ||| |||||||||| ||||||||||||||||||||    
T  47811738 tcaaacaataaatggtcttgttcagtgtacacctgatttgtc 47811779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 6521987 - 6522027
Alignment:
Q  223 caaaccatatatggtcttgtgcagtgtacacctgatttgtc 263  Q
    |||||||||||||||||||| || || ||||||||||||||    
T  6521987 caaaccatatatggtcttgttcaatgcacacctgatttgtc 6522027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 375
Target Start/End: Complemental strand, 28830976 - 28830931
Alignment:
Q  330 gattggttgtagagttgtcaaaccaagttgtaatattagatatgaa 375  Q
    |||||||  ||||||| | |||||||||||||||||||||||||||    
T  28830976 gattggtgctagagttatgaaaccaagttgtaatattagatatgaa 28830931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University