View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8761_low_15 (Length: 391)
Name: NF8761_low_15
Description: NF8761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8761_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 7 - 374
Target Start/End: Original strand, 5361662 - 5362029
Alignment:
| Q |
7 |
atggacatcataaggttgctatggaaggaccttgttgtgaatctcaaccaatgccgcttaaactcgccgcacgtgcgaaatggtatcaatttatcaacat |
106 |
Q |
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| T |
5361662 |
atggacttcataaggttgctatggaaggaccttgttgtgaatctcaaccaatgccgcttaaactcgccgcacgtgcgaaatggtatcaatttatcaacat |
5361761 |
T |
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| Q |
107 |
tgttatgtattagaaatttatgttttgttttatgcttttaactaacattcattgtaccttgtttttggggtgaatgttgttgttttggactatgctgctt |
206 |
Q |
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| T |
5361762 |
tgttatatattagaaatttatgttttgttttatgcttttaactaacattcattgtaccttgtttttggggtgaatgttgttgttttggactatgctgctt |
5361861 |
T |
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| Q |
207 |
tgaatataacaatgctacataaatttagtacttaaatattgtcacatgattaggataagaagagaggattattaataataaagtgaagtgaaatgtatgt |
306 |
Q |
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| T |
5361862 |
tgaatataacaatgctacataaatttagtacttaaatattgtcacatgattaggataagaagagaggattattaataataaagtgaagtgaaatgtatgt |
5361961 |
T |
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| Q |
307 |
taaatgttattgcaaaagtaactctttaccctgattacgttggctctcattgtggaatgtttggatgt |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5361962 |
taaatgttattgcaaaagtaactctttaccctgattacgttggctctcattgtggaatgtttggatgt |
5362029 |
T |
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