View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8761_low_16 (Length: 334)
Name: NF8761_low_16
Description: NF8761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8761_low_16 |
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| [»] scaffold0154 (2 HSPs) |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0154 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 23734 - 24040
Alignment:
| Q |
16 |
ttttcaaccgtcagaagcttcccgagccggtccaccgcagaatcaatactagaatcaacatcccatggacttaactcttctaattccggtgaattcggaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23734 |
ttttcaaccgtcagaagcttcccgagccggtccaccgcagaatcaatactagaatcaacatcccatggacttaactcttccaattccggtgaattcggag |
23833 |
T |
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| Q |
116 |
ccgaatcagtctcactagaaacccaatcattgaaatcaaagtgatttcttggtgacgactcatcaacattcttcacttcttcaacaaaaggatgattcaa |
215 |
Q |
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| T |
23834 |
cagaatcattcacactagaaacccaatcattgaaatcaaagtgatttcttggtgacgactcatcaacattcttcacttcttcaacaaaaggatgattcaa |
23933 |
T |
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| Q |
216 |
aagcatctcagccgtccatctctttcttggatctttaacaaaacacttctcaacaaaatcttttccttctttcgataattcttcgggtatcaacggcgat |
315 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23934 |
aagcatctcagccgtccatctctttcttcgatctttaacaaaacacttctcaacaaaatcttttccttctttcgataattcttcgggtatcaacggcgat |
24033 |
T |
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| Q |
316 |
tcttctc |
322 |
Q |
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||||||| |
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| T |
24034 |
tcttctc |
24040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 65 - 322
Target Start/End: Original strand, 14363 - 14620
Alignment:
| Q |
65 |
tagaatcaacatcccatggacttaactcttctaattccggtgaattcggaaccgaatcagtctcactagaaacccaatcattgaaatcaaagtgatttct |
164 |
Q |
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| T |
14363 |
tagaatcaaaatcccattgatttgagtcttccgattccggtgaacttggaactgaatcactagcatcggaaacccaatcattgaaatcaaagtgatttct |
14462 |
T |
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| Q |
165 |
tggtgacgactcatcaacattcttcacttcttcaacaaaaggatgattcaaaagcatctcagccgtccatctctttcttggatctttaacaaaacacttc |
264 |
Q |
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| T |
14463 |
tggcgacgattcattaacattaatcacttcttcaacaaaaggatgattcaaaagcatctcagccgtccatctttttcttggatctttcacaaaacacttc |
14562 |
T |
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| Q |
265 |
tcaacaaaatcttttccttctttcgataattcttcgggtatcaacggcgattcttctc |
322 |
Q |
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| T |
14563 |
tcaacaaaatcttttccttctttcgataattcttcgggtatcaacggcgattcttctc |
14620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 67 - 322
Target Start/End: Complemental strand, 971 - 716
Alignment:
| Q |
67 |
gaatcaacatcccatggacttaactcttctaattccggtgaattcggaaccgaatcagtctcactagaaacccaatcattgaaatcaaagtgatttcttg |
166 |
Q |
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| T |
971 |
gaatcaaaatcccatggacttgattcttccgattccggtgaattcggaaccgaatcagtcgcactagaaacccaatcattgaaatcaaagtgatttcttg |
872 |
T |
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| Q |
167 |
gtgacgactcatcaacattcttcacttcttcaacaaaaggatgattcaaaagcatctcagccgtccatctctttcttggatctttaacaaaacacttctc |
266 |
Q |
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|||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
871 |
gtgatgattcattaacattcttcacttcttcaacaaaaggatgattcaaaagcatctcagccgtccatctttttcttggatctttcacaaaacacttctc |
772 |
T |
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| Q |
267 |
aacaaaatcttttccttctttcgataattcttcgggtatcaacggcgattcttctc |
322 |
Q |
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||||||||||||||||||||| || |||||||||||||||| |||||||||||||| |
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| T |
771 |
aacaaaatcttttccttcttttgacaattcttcgggtatcaccggcgattcttctc |
716 |
T |
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