View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8761_low_18 (Length: 317)

Name: NF8761_low_18
Description: NF8761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8761_low_18
NF8761_low_18
[»] chr1 (2 HSPs)
chr1 (14-317)||(4357975-4358276)
chr1 (20-164)||(4352731-4352877)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 317
Target Start/End: Complemental strand, 4358276 - 4357975
Alignment:
Q  14 atcactatcaataatccttgctttctttttggattgtcttgcatacttacctccacaccaaatgatgcaggctccattcaccaatgttaattgctcaatt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4358276 atcactatcaataatccttgctttctttttggattgtcttgcatacttacctccacaccaaatgatgcaggctccattcaccaatgttaattgctcaatt 4358177  T
Q  114 gcaacatgctgtgactcgcaaggataatgtacagaggtttactttccaagatttcatgaaggtttgttttgaaattttactcacaagctcatagcttatt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4358176 gcaacatgctgtgactcgcaaggataatgtacagaggtttactttccaagatttcatgaaggtttgttttgaaattttactcacaagctcatagtttatt 4358077  T
Q  214 acaaacagnnnnnnnnnnnnngctttgctgcatgccttattatgaggccctgttctgtttctttctcttaacgtgtgttctttgtccattcgccttaaac 313  Q
    ||||  ||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4358076 acaa--agtctttttatttttgctttgctgcatgccttattatgaggccctgttctgtttctttctcttaacgtgtgttctttgtccattcgccttaaac 4357979  T
Q  314 cttt 317  Q
    ||||    
T  4357978 cttt 4357975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 4352877 - 4352731
Alignment:
Q  20 atcaataatccttgctttctttttggattgtcttgcatacttacctccacaccaaatgatgcaggctcc---attcaccaatgttaattgctcaattgca 116  Q
    |||| |||||||| | ||||||||||||| || || ||| |||| |||| ||||||||||||| || ||   |||| || ||||||||||||||||||||    
T  4352877 atcagtaatccttaccttctttttggattttcctgtatatttacttccataccaaatgatgcatgcaccaatattcccccatgttaattgctcaattgca 4352778  T
Q  117 acatgctgtgactcgcaaggataatgtacagaggtttactttccaaga 164  Q
    |||| | |||||  |||||||||||| ||| ||| || | ||||||||    
T  4352777 acattc-gtgaccggcaaggataatgcacaaaggctttccttccaaga 4352731  T

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